Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19b12
(320 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK128348-1|BAC87394.1| 129|Homo sapiens protein ( Homo sapiens ... 30 1.8
AF235616-1|AAK13746.1| 61|Homo sapiens immunoglobulin heavy ch... 28 5.4
U83410-1|AAC51190.1| 745|Homo sapiens CUL-2 protein. 28 7.2
U58088-1|AAC50545.1| 651|Homo sapiens Hs-CUL-2 protein. 28 7.2
BC110901-1|AAI10902.1| 745|Homo sapiens CUL2 protein protein. 28 7.2
BC009591-1|AAH09591.1| 745|Homo sapiens cullin 2 protein. 28 7.2
AL392046-3|CAI13164.1| 706|Homo sapiens cullin 2 protein. 28 7.2
AL392046-2|CAI13163.1| 745|Homo sapiens cullin 2 protein. 28 7.2
AL392046-1|CAI13162.1| 688|Homo sapiens cullin 2 protein. 28 7.2
AF126404-1|AAD23581.1| 745|Homo sapiens cullin 2 protein. 28 7.2
X61012-1|CAA43346.1| 131|Homo sapiens IG VH protein. 27 9.5
AJ415042-1|CAC94200.1| 85|Homo sapiens immunoglobulin heavy ch... 27 9.5
>AK128348-1|BAC87394.1| 129|Homo sapiens protein ( Homo sapiens
cDNA FLJ46490 fis, clone THYMU3027540. ).
Length = 129
Score = 29.9 bits (64), Expect = 1.8
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = -3
Query: 246 YFHLVHYYLAANPLHVFVYVQYLSIGYIL 160
Y H+ H Y+ ++++++ YL +GY +
Sbjct: 96 YMHVYHTYMCVYHIYIYMHDPYLKVGYFI 124
>AF235616-1|AAK13746.1| 61|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 61
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 197 LSTYNIYPLVTS*YICRKLSHDMSSLDFW 111
L+ N+ P+ T+ Y C ++SH +++ D W
Sbjct: 31 LTMTNMDPVDTATYYCARISHLLAAFDIW 59
>U83410-1|AAC51190.1| 745|Homo sapiens CUL-2 protein.
Length = 745
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 2 SLVKALVTLTVFFVPRNFFKMPSCVKRHCRNYTRKTPKSLGMT 130
+L KAL ++ + P++ K P + ++C N +K+ K GMT
Sbjct: 367 ALDKALTSVVNYREPKSVCKAPELLAKYCDNLLKKSAK--GMT 407
>U58088-1|AAC50545.1| 651|Homo sapiens Hs-CUL-2 protein.
Length = 651
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 2 SLVKALVTLTVFFVPRNFFKMPSCVKRHCRNYTRKTPKSLGMT 130
+L KAL ++ + P++ K P + ++C N +K+ K GMT
Sbjct: 273 ALDKALTSVVNYREPKSVCKAPELLAKYCDNLLKKSAK--GMT 313
>BC110901-1|AAI10902.1| 745|Homo sapiens CUL2 protein protein.
Length = 745
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 2 SLVKALVTLTVFFVPRNFFKMPSCVKRHCRNYTRKTPKSLGMT 130
+L KAL ++ + P++ K P + ++C N +K+ K GMT
Sbjct: 367 ALDKALTSVVNYREPKSVCKAPELLAKYCDNLLKKSAK--GMT 407
>BC009591-1|AAH09591.1| 745|Homo sapiens cullin 2 protein.
Length = 745
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 2 SLVKALVTLTVFFVPRNFFKMPSCVKRHCRNYTRKTPKSLGMT 130
+L KAL ++ + P++ K P + ++C N +K+ K GMT
Sbjct: 367 ALDKALTSVVNYREPKSVCKAPELLAKYCDNLLKKSAK--GMT 407
>AL392046-3|CAI13164.1| 706|Homo sapiens cullin 2 protein.
Length = 706
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 2 SLVKALVTLTVFFVPRNFFKMPSCVKRHCRNYTRKTPKSLGMT 130
+L KAL ++ + P++ K P + ++C N +K+ K GMT
Sbjct: 367 ALDKALTSVVNYREPKSVCKAPELLAKYCDNLLKKSAK--GMT 407
>AL392046-2|CAI13163.1| 745|Homo sapiens cullin 2 protein.
Length = 745
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 2 SLVKALVTLTVFFVPRNFFKMPSCVKRHCRNYTRKTPKSLGMT 130
+L KAL ++ + P++ K P + ++C N +K+ K GMT
Sbjct: 367 ALDKALTSVVNYREPKSVCKAPELLAKYCDNLLKKSAK--GMT 407
>AL392046-1|CAI13162.1| 688|Homo sapiens cullin 2 protein.
Length = 688
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 2 SLVKALVTLTVFFVPRNFFKMPSCVKRHCRNYTRKTPKSLGMT 130
+L KAL ++ + P++ K P + ++C N +K+ K GMT
Sbjct: 310 ALDKALTSVVNYREPKSVCKAPELLAKYCDNLLKKSAK--GMT 350
>AF126404-1|AAD23581.1| 745|Homo sapiens cullin 2 protein.
Length = 745
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 2 SLVKALVTLTVFFVPRNFFKMPSCVKRHCRNYTRKTPKSLGMT 130
+L KAL ++ + P++ K P + ++C N +K+ K GMT
Sbjct: 367 ALDKALTSVVNYREPKSVCKAPELLAKYCDNLLKKSAK--GMT 407
>X61012-1|CAA43346.1| 131|Homo sapiens IG VH protein.
Length = 131
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 167 TS*YICRKLSHDMSSLDFWESFLYSFY 87
T+ Y C + S S DFW + Y +Y
Sbjct: 91 TAVYYCARDSRGYSYYDFWSGYFYYYY 117
>AJ415042-1|CAC94200.1| 85|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 85
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 197 LSTYNIYPLVTS*YICRKLSHDMSSLDFW 111
L+ N+ P+ T+ Y C +D SLD+W
Sbjct: 57 LTLTNMDPVDTATYYCAHYFYDSGSLDYW 85
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,746,774
Number of Sequences: 237096
Number of extensions: 767276
Number of successful extensions: 1383
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1569468906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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