Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19b09
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 95 9e-21
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 29 0.52
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 28 1.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 2.8
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 27 3.7
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 4.8
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 6.4
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 8.5
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 25 8.5
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 95.1 bits (226), Expect = 9e-21
Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 1/145 (0%)
Frame = +3
Query: 303 RLPERYGAGEKSVWVEYIQLAAEYK-PAVNLGQGFPDYHAPKHVTEALSQIATSENPLLH 479
R + A VW Q AE K P V+L QGF +Y+ PK V +A + + + +
Sbjct: 7 RPSNKVAASRPDVWTLVNQATAECKVPPVSLSQGFFNYNPPKFVLDAAKK--SIDEVACN 64
Query: 480 QYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILGHVDTGDEVIII 659
QY+ G P L + LS+ YSP R ++ EI+VT+GA E +S ++ GDEVI++
Sbjct: 65 QYSHTRGRPSLRKALSEAYSPYFKRTLNPDTEIVVTAGANEGFFSVFAAFLNPGDEVIVM 124
Query: 660 EPYFDCYDFMVKCAGGVPRFIALKP 734
EP+FD Y + GGVP ++ + P
Sbjct: 125 EPFFDQYISNITMNGGVPVYVPIIP 149
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 29.5 bits (63), Expect = 0.52
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 411 YHAPKHVTEALSQIATSENP-LLHQYTRGFGLPRLVENLSKVYSPLIGRQ 557
Y P +T+ L I +SEN L+HQ R GLP+ +E +Y+P RQ
Sbjct: 604 YWDPFMITD-LKFIGSSENAELIHQRLRN-GLPKSIEKGPFIYNPFNRRQ 651
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 567 FNEILVTSGAYEALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVP 713
F ++ S A Y +L H D + +I+I+P + F + GGVP
Sbjct: 583 FLQVFNNSPDETAFYRHMLNHEDVNNSLIMIQPTLQSFSF--EHPGGVP 629
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 471 LLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTS 590
LL RG G R E+L K PL+ ++AFN +L+++
Sbjct: 720 LLRALFRGIGGGRF-ESLYKEVMPLLHALLEAFNSLLISA 758
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 111 MTVQIKTSISFTYISVDY*FSNVKNDEILT 22
+T + T + YI +DY F ++KN+ ILT
Sbjct: 217 LTNECFTCENLKYIILDYSFRDIKNNSILT 246
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +3
Query: 510 LVENLSKVYSPL--IGRQIDAFNEILVTSGAYEALYSTILGHVDTG--DEVIIIEPYFDC 677
++E + K S L + ++ID + L A++ LYS +L V G D + ++E +C
Sbjct: 536 VIEIVQKSLSVLHKVTKKIDKKAQHLQQLNAFQLLYSLVLLQVYAGDTDSIDVLEDIDNC 595
Query: 678 Y 680
Y
Sbjct: 596 Y 596
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 507 RLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILGHVDTGDE 647
R++ N++K + I +D FNE+ + L + GHVD DE
Sbjct: 74 RVLRNVNKKFEGDIKNCLDGFNELNDPIVQEKILRAFEQGHVDEEDE 120
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 444 SQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEIL 581
S + T N L T FG L + V + L+ R+I+ F E+L
Sbjct: 460 STLNTFMNELNSSMTSAFGDTFLASTVQNVMNCLLYRKIENFEEVL 505
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 230 SIEECENRTFYSTIECLSYNGRKVSI 307
SIEEC Y+ + L Y G +V +
Sbjct: 294 SIEECAKLNIYTAQQALEYIGARVKV 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,247
Number of Sequences: 5004
Number of extensions: 62352
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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