Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19b07
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 30 0.33
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 29 0.75
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 1.3
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 28 1.3
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 28 1.7
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 28 1.7
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 2.3
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 27 2.3
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 3.0
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 3.0
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.0
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 26 5.3
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 26 5.3
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 5.3
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 26 5.3
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 26 5.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 7.0
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 26 7.0
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 25 9.3
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 30.3 bits (65), Expect = 0.33
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 228 SVSPNNCATLNHMNRKQFYSALKLIAAHQTNIALKPDLLSTPIDLPLP 371
SV+P TLNH N Q +A + + Q+N + P S P+ +PLP
Sbjct: 330 SVAPPASNTLNHANGNQAENASE-SSTSQSNDSQGPANTSYPVSVPLP 376
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 29.1 bits (62), Expect = 0.75
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Frame = +3
Query: 387 LNSEANSDLI--QLSNSPKEHHISKRERNFVGNISAYEPIRLSSNLSDSDVPQTLSHDGN 560
LNS + DL+ ++ +P IS+R R +G I P R L+D +T +
Sbjct: 133 LNSNSEHDLLPKSVNKTPGSLSISRRRR--IGRIGLGPPKRAEYTLTDPS--KTSDTKNS 188
Query: 561 EALSTDSEIESETMSQRSGS-RGRRVKT----GSPWSTASESPTPT 683
D E++S +S S S +K +P T+ E P P+
Sbjct: 189 TEADEDIEMKSREVSPASNSVAATTLKPLQLHNTPLQTSQEHPKPS 234
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 372 RFTWALNSEANSDLIQLSNSPKEHHISKRERNFVGNISAYEPIRLSSNLSDSDVPQTLSH 551
RF+ ++ S +++ N P+EH + R+F E + L+ S V + SH
Sbjct: 230 RFSRNAGNDPTSTALEVRNIPEEHFNEENIRSFFSKFGVLEKVELNPT-HHSCVLEFTSH 288
Query: 552 D-GNEALSTDSEI 587
+ N A S+ I
Sbjct: 289 EAANNAWSSPEPI 301
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 105 FGDLFLCCDEESNGKIPILKATELFRSSNISNDILKQIMDISVSPNN 245
F LF D+ G + +A F +S + D+L QI D+S + +N
Sbjct: 263 FCQLFSNVDKAHKGYVSGSEAYSFFLASKLPEDVLAQIWDLSDTNSN 309
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +3
Query: 504 LSSNLSDSDVPQTLSHDGNEALSTDSEIESETMSQRSGS 620
++S DSDV + S+ GNE S+ ++I S ++S + S
Sbjct: 1 MNSESVDSDVAASTSNKGNELCSSSTDITSLSVSSPNES 39
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.7
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = +3
Query: 24 KSYRSLYSC*INKIMEDLNLTETETRYFGDLFLCCDEE----SNGKIPILK-ATELFRSS 188
KSY SL+S ++ E+L+ ET+++ + +EE + K+ I + T LF
Sbjct: 811 KSYHSLFSSQFRQLFEELSNKETQSKLYQKRLEDLNEELTKVRSEKVVITREKTCLFCHK 870
Query: 189 NISNDILKQIMDISVSPNNCA 251
+ ++ D SV CA
Sbjct: 871 RLGKSVISIFPDGSVVHYGCA 891
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.5 bits (58), Expect = 2.3
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Frame = +3
Query: 471 VGNISAYEPIRLSSN--LSDSDVPQTLSHDGNEALSTDSEIESETMSQRSGSRGRRVKTG 644
V + A E ++N + DV T ++D + SE+ + T + S R
Sbjct: 70 VSKLRAQEAAEAAANGGSTGDDVNATNANDATVPATVSSEV-THTSEGYADSNDSRP--- 125
Query: 645 SPWSTASESPTPTNSVAERVHPVWEHSATGRGVWPTNTAEE 767
S S +SESP P NS + P ++ +G + N E
Sbjct: 126 SSISNSSESPAPINSATASMSPA--NNTSGNNITSPNVRGE 164
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 642 QFSLSDHAIQIFVTLFPTQFQNQY*VLHSHHET 544
QFS+ + +++FV P+ + +LH HET
Sbjct: 222 QFSVDKNQLKMFVHYLPSYYHLHVHILHVDHET 254
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 3.0
Identities = 27/100 (27%), Positives = 46/100 (46%)
Frame = +3
Query: 390 NSEANSDLIQLSNSPKEHHISKRERNFVGNISAYEPIRLSSNLSDSDVPQTLSHDGNEAL 569
+S ++SD S S E S + + S+ E SS+ SDS+ + + +
Sbjct: 200 SSSSSSD--SESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSS 257
Query: 570 STDSEIESETMSQRSGSRGRRVKTGSPWSTASESPTPTNS 689
S+DSE ES + S S + S S +S+S + ++S
Sbjct: 258 SSDSESESSSKDSDSSSNSSDSEDDSS-SDSSDSESESSS 296
Score = 27.1 bits (57), Expect = 3.0
Identities = 24/89 (26%), Positives = 43/89 (48%)
Frame = +3
Query: 423 SNSPKEHHISKRERNFVGNISAYEPIRLSSNLSDSDVPQTLSHDGNEALSTDSEIESETM 602
S S E + S + + S+ E SS+ SDS+ + + + S+DSE +S +
Sbjct: 227 SESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSD 286
Query: 603 SQRSGSRGRRVKTGSPWSTASESPTPTNS 689
S S S + S S++S+S + ++S
Sbjct: 287 SSDSESESSSEDSDST-SSSSDSDSSSSS 314
Score = 26.6 bits (56), Expect = 4.0
Identities = 26/103 (25%), Positives = 45/103 (43%)
Frame = +3
Query: 390 NSEANSDLIQLSNSPKEHHISKRERNFVGNISAYEPIRLSSNLSDSDVPQTLSHDGNEAL 569
+S ++SD S S E S + + S+ E SS+ SDS+ + + +
Sbjct: 146 SSSSSSD--SESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSS 203
Query: 570 STDSEIESETMSQRSGSRGRRVKTGSPWSTASESPTPTNSVAE 698
S+DSE ES + S S ++ S S + ++S +E
Sbjct: 204 SSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE 246
Score = 25.8 bits (54), Expect = 7.0
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +3
Query: 507 SSNLSDSDVPQTLSHDGNEALSTDSEIESETMSQRSGSRGRRVKTGSPWSTASESPTPTN 686
SS+ SDS+ + + + S+DSE ES + S S ++ S S + ++
Sbjct: 129 SSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSD 188
Query: 687 SVAE 698
S +E
Sbjct: 189 SESE 192
Score = 25.8 bits (54), Expect = 7.0
Identities = 30/103 (29%), Positives = 42/103 (40%)
Frame = +3
Query: 390 NSEANSDLIQLSNSPKEHHISKRERNFVGNISAYEPIRLSSNLSDSDVPQTLSHDGNEAL 569
+SE N S+S E S E + + S+ SS SDS + S D + +
Sbjct: 230 SSEDNDSSSSSSDSESE---SSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSD 286
Query: 570 STDSEIESETMSQRSGSRGRRVKTGSPWSTASESPTPTNSVAE 698
S+DSE ES + S S + S S S T T + E
Sbjct: 287 SSDSESESSSEDSDSTSSSSDSDSSSS-SEDGNSNTDTTTSGE 328
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.1 bits (57), Expect = 3.0
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Frame = +3
Query: 384 ALNSEANSDLIQLSNSPKEHHISKRE-RNFVGNISAYEPIRLS--SNLSDSDVPQTLSHD 554
AL + NSD+ + N+P H+ S + +G+IS E + S L ++ + LS
Sbjct: 540 ALGTSDNSDMYEKENTPIHHNESLNQLSKDLGSISLSEETKQEKPSKLKETVESKRLS-- 597
Query: 555 GNEALSTDSEIESETMSQRSGSRGRRVKTGSPWSTASESPTPT 683
+ S S+ + SGS+ K SPW + P+
Sbjct: 598 --TGVQKQSPAASKEIPVTSGSQTTAPKP-SPWKSLPPKHLPS 637
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +3
Query: 522 DSDVPQTLSHDGNEALSTDSEIESETMSQRSGSRGRRVKTGSPWSTASESPTPTNSVAER 701
D + + +S +EAL ++E Q + KTGSPW+ S+ T +R
Sbjct: 639 DETISREMSIASSEALP---QVEKSNSDQPPVAIPSTSKTGSPWAKVSDVSTSMAQEIQR 695
Query: 702 V 704
+
Sbjct: 696 M 696
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 4.0
Identities = 22/89 (24%), Positives = 36/89 (40%)
Frame = +3
Query: 492 EPIRLSSNLSDSDVPQTLSHDGNEALSTDSEIESETMSQRSGSRGRRVKTGSPWSTASES 671
EP+ L + VP+T H +S + ET+S+ S + + SP +
Sbjct: 133 EPLPGEPPLPNEPVPETNCHK-------ESPLSDETVSETS----KNDTSNSPTNENQAQ 181
Query: 672 PTPTNSVAERVHPVWEHSATGRGVWPTNT 758
P+ S R+ +W+ S W T T
Sbjct: 182 PSIAWSEGHRIAAIWDPSQQAYYFWDTLT 210
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 93 ETRYFGDLFLCCDEESNGKIPILKATELFRSSNISNDILKQIMDIS 230
E + ++F + E NG + KA + RSS +S+D L++I D++
Sbjct: 5 EKNKYWEIFRGLNPE-NGYLSGSKAAGVLRSSKLSSDKLEKIWDLA 49
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 5.3
Identities = 22/71 (30%), Positives = 38/71 (53%)
Frame = +3
Query: 477 NISAYEPIRLSSNLSDSDVPQTLSHDGNEALSTDSEIESETMSQRSGSRGRRVKTGSPWS 656
N + P L L+ ++ + +SH G+EA+S+ S S MS+ S + + +G+P
Sbjct: 431 NEEDFIPNSLQELLTPEELERKMSH-GDEAVSSSSA--SRFMSKVSSN----LNSGNPTP 483
Query: 657 TASESPTPTNS 689
S + TPT+S
Sbjct: 484 YNSYNGTPTSS 494
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 26.2 bits (55), Expect = 5.3
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +3
Query: 186 SNISNDILKQIMDISVSPNNCATLNHMNR-KQFYSALKLIAAHQTNIALKP--DLLSTPI 356
S+I N L I + N A H+N+ K SA LI Q + ++ D L PI
Sbjct: 174 SSIQNTDLNT--SIKFTENISANAIHVNQDKVIRSANNLIINSQPILPVRSFLDALGEPI 231
Query: 357 DLPLPRFTWALNSEANSDLIQLSNSPK 437
L T+ LNS S + SN+P+
Sbjct: 232 YLSPTSSTYFLNSVLASLQLNSSNTPE 258
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.3
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +3
Query: 387 LNSEANSDLI--QLSNSPKEH-HISKRERNFVGNISAYEPIRLSSNLSDSDVPQTLSHDG 557
LNS +S I QL + + HIS+ E ++ S NL PQT+SH+
Sbjct: 60 LNSLIDSGSIHWQLREQEQSNSHISRNENELFSKENSIYNGNFSENLGVQPNPQTISHES 119
Query: 558 -NE---ALSTDSEIESE 596
NE L D+ + SE
Sbjct: 120 VNEEYTELPYDAHLPSE 136
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 26.2 bits (55), Expect = 5.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 116 QITEISCFGFCQVEILHYF 60
Q++EI C G+ + ++HYF
Sbjct: 309 QLSEIICAGYSALNLIHYF 327
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 7.0
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = +3
Query: 81 LTETETRYFGDLFLCCDEESNGKIPILKATELFRSSNISNDILKQIMDISVSPNNCATLN 260
+++ E R + +F D+E G + E+F S ++ L+ I ++ +
Sbjct: 817 ISKEEKRIYDQIFDAWDKERKGTLGGNAVLEIFGQSKLTRTELEHIWNLC----DHGDKG 872
Query: 261 HMNRKQFYSALKLIAAHQTNIALKPDLLSTPIDLPLPR-FTWALNSEAN 404
++R +F AL LI + N P +L + P R FT +LN N
Sbjct: 873 SLDRDEFAVALHLI-YRKLNGNEVPAVLPPELIPPSTRNFTESLNQVKN 920
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 637 KLGHPGAQ-RVKAQPQPTALPKEYTQFGNIVPPVEEFGL 750
K+ PGA+ +V A P P + + N + PVEE G+
Sbjct: 165 KVNLPGAEEQVSATPLPASPNALLSPNDNTIKPVEELGM 203
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +3
Query: 591 SETMSQRSGSRGRRVKTG-SPWSTASESPTPTNSVAERVHPVWEHSATGRGVWPTN 755
S T SQR ++ +G S +++ T T+ V HP E + W TN
Sbjct: 98 STTSSQRHNTKTITFFSGTSDYTSVYYDTTGTDDVVYEYHPSSERHKSTNDTWSTN 153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,166,221
Number of Sequences: 5004
Number of extensions: 66408
Number of successful extensions: 235
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -