Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19b07
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23523-2|AAC46559.2|  399|Caenorhabditis elegans Hypothetical pr...    36   0.025
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    32   0.53 
AL132864-5|CAH60767.2|  281|Caenorhabditis elegans Hypothetical ...    30   2.1  
U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z81054-7|CAB02881.1|  472|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U70851-8|AAB09131.1|  164|Caenorhabditis elegans Calmodulin rela...    28   8.7  

>U23523-2|AAC46559.2|  399|Caenorhabditis elegans Hypothetical
           protein F53A9.4 protein.
          Length = 399

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
 Frame = +3

Query: 345 STPIDLPLPRFTWALNSEANSDLIQLSNSPKEHHISK-RERNFVGNISAYEPIRLSSNLS 521
           S P+  P P+   + +S ++ D +  +NS +E+   + RE N VGNIS            
Sbjct: 5   SRPVPPP-PKRRISESSSSSDDELTGNNSFRENQQRRFRENNEVGNIS------------ 51

Query: 522 DSDVPQTLSHDGNEA---LSTDSEIESETMSQRSGSRGRRVKTG 644
           DSD  +  SH  +++   + TD E + E  +Q S  R RRV  G
Sbjct: 52  DSDNDEVFSHQESQSVGFIETDEERQREEHAQNSNLRNRRVSYG 95


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
            protein H02F09.3 protein.
          Length = 1275

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +3

Query: 510  SNLSDSDVPQTLSHDGNEALSTDSEIESETMSQRSGSRGRRVKTGSPWSTASESPTPTNS 689
            S  S   VP T+S      ++ +S +   T S  SGS G   + GS  S +S S T T+S
Sbjct: 1005 STESTPTVPSTVSGSTGSTVTGESTVSGSTASTSSGSTGSSTEAGSTVSGSSAS-TVTSS 1063


>AL132864-5|CAH60767.2|  281|Caenorhabditis elegans Hypothetical
           protein Y53H1A.5 protein.
          Length = 281

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 330 KPDLLSTPIDLPLPRFTWALNSEANSDLIQLSNSPKEHHI 449
           +P  +  P D  L  +TW  N E+ + LI +SN   E  +
Sbjct: 67  QPTTVQLPPDCKLVEYTWQENGESRTVLIPMSNDSTEDDV 106


>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical
           protein K09H11.4 protein.
          Length = 630

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +3

Query: 555 GNEALSTDSEIESETMSQRSGSRGRRVKTGSPWSTASESPTPTNSVAERVHPVWEHS 725
           G +A   D    SE    RSG  GRRV+  +  + AS++ +  +  +ER H   +HS
Sbjct: 440 GRQAAPGDDVGSSE---DRSGQDGRRVQQQNASTPASDNSSSHDDSSERRHSTSDHS 493


>AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical
           protein C09H5.2b protein.
          Length = 1039

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 420 LSNSPKEH--HISK-RERNFVGNISAYEPIRLSSNLSDSDVPQTLSHDGNEALSTDSEIE 590
           LS+S  EH  HI++  ER F   I   EP + S  L+  +  Q L  DG  ALS    I 
Sbjct: 33  LSSSFVEHQMHIAQLSERFFHSKIDIVEP-KKSKGLTKQEAAQKLKTDGKNALSPPKTIS 91

Query: 591 S 593
           +
Sbjct: 92  N 92


>AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical
           protein C09H5.2a protein.
          Length = 1054

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 420 LSNSPKEH--HISK-RERNFVGNISAYEPIRLSSNLSDSDVPQTLSHDGNEALSTDSEIE 590
           LS+S  EH  HI++  ER F   I   EP + S  L+  +  Q L  DG  ALS    I 
Sbjct: 33  LSSSFVEHQMHIAQLSERFFHSKIDIVEP-KKSKGLTKQEAAQKLKTDGKNALSPPKTIS 91

Query: 591 S 593
           +
Sbjct: 92  N 92


>Z81054-7|CAB02881.1|  472|Caenorhabditis elegans Hypothetical
           protein F01D4.4 protein.
          Length = 472

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 411 LIQLSNSPKEHHISKRERNFVGNISAYEPI 500
           +IQ S +P EH  +K E   +GN+   EPI
Sbjct: 77  VIQFSTTPGEHIPTKPEVKLIGNMHGNEPI 106


>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical
           protein R09A8.1 protein.
          Length = 1095

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
 Frame = +3

Query: 219 MDISVSPNNCATLNHMNRKQFYSALKLIAAHQTNIALKPDLLSTPIDLPLPRFTWALNSE 398
           +DIS  PN+  T    N  +  S    +    TN+     L+   ID     +  A + E
Sbjct: 210 VDISSHPNS-TTERFSNGSRNSSRNSAVLTFSTNVQSHAGLVRNDIDSN--SYAGARSIE 266

Query: 399 ANSDLIQLSNSPKEHHISKRERN-FVGNISAYEPIRLSSNLSDSDVPQTLSHDGNEALST 575
            +SD  ++    K   IS   +N F GN +    +R SS+LSD +V  +L   GN   ST
Sbjct: 267 -DSDFSKVDR--KMETISTETQNGFRGNSA----LRGSSSLSDMNVQSSLMVGGNR--ST 317

Query: 576 DSEIESE 596
           D  + ++
Sbjct: 318 DDRVNAQ 324


>U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical
           protein F18E9.3 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = +3

Query: 516 LSDSDVPQTLSHDGNEALSTDSEIESETMSQRSGSRGRRVKTGSPWSTASESPTPTNSV- 692
           LS +    T    G   + T +     T  ++   RG R++   P ++ + +PTPT +  
Sbjct: 176 LSTTPTSTTTRRKGGVIIDTTTSPRPLTTPRQWTIRGIRIRVTRPPASTTTTPTPTTTTQ 235

Query: 693 AERVHPVWEHSATGRGVW 746
           +      W  + T    W
Sbjct: 236 SPNTRAQWWKTTTSASRW 253


>U70851-8|AAB09131.1|  164|Caenorhabditis elegans Calmodulin related
           genes protein 3 protein.
          Length = 164

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 81  LTETETRYFGDLFLCCDEESNGKIPILKATELFRSSNISNDILKQIMDI 227
           LTE E   F + FL  D++ NG I I +     R+    N   +Q+M+I
Sbjct: 23  LTEEEIHEFKEAFLLFDKDGNGTISIKELGVAMRALG-QNPTEQQMMEI 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,497,829
Number of Sequences: 27780
Number of extensions: 371613
Number of successful extensions: 1163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)