Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19b07
(783 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 26 0.45
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 26 0.45
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 25 0.60
DQ855486-1|ABH88173.1| 104|Apis mellifera chemosensory protein ... 23 2.4
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 23 2.4
AM158085-1|CAJ43389.1| 171|Apis mellifera globin 1 protein. 23 4.2
AM158084-1|CAJ43388.1| 171|Apis mellifera globin 1 protein. 23 4.2
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 22 5.6
AY217747-1|AAP45005.1| 246|Apis mellifera short-chain dehydroge... 22 7.4
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 21 9.8
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 21 9.8
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 25.8 bits (54), Expect = 0.45
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +3
Query: 507 SSNLSDSDVPQTLSHDGNEALSTDSEIESETMSQRSGSRGRRVKTGSPWSTASESPTPTN 686
++ +SDS T S+ ++ S S + S+ SG GRR T S+ P P +
Sbjct: 9 NAKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFG--SSNEALPQPIS 66
Query: 687 SVAERVH 707
++ H
Sbjct: 67 KRKDKEH 73
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 25.8 bits (54), Expect = 0.45
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +3
Query: 507 SSNLSDSDVPQTLSHDGNEALSTDSEIESETMSQRSGSRGRRVKTGSPWSTASESPTPTN 686
++ +SDS T S+ ++ S S + S+ SG GRR T S+ P P +
Sbjct: 9 NAKVSDSGYSNTCSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFG--SSNEALPQPIS 66
Query: 687 SVAERVH 707
++ H
Sbjct: 67 KRKDKEH 73
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 25.4 bits (53), Expect = 0.60
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 246 CATLNHMNRKQFYSA 290
C+ LNHM R++FY +
Sbjct: 446 CSNLNHMMREEFYQS 460
>DQ855486-1|ABH88173.1| 104|Apis mellifera chemosensory protein 5
protein.
Length = 104
Score = 23.4 bits (48), Expect = 2.4
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +1
Query: 526 VMFRRHCLMMGMKHSVLILKLSRKQCHKDLDRVVG 630
++ R HC ++G K L+ ++ C++ R +G
Sbjct: 40 ILDRGHCDVIGKKIKELLPEVLNNHCNRCTSRQIG 74
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 23.4 bits (48), Expect = 2.4
Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Frame = -1
Query: 561 HSHHETMSAEH-HYQ 520
H HH+T S +H HY+
Sbjct: 353 HHHHQTQSLQHLHYR 367
>AM158085-1|CAJ43389.1| 171|Apis mellifera globin 1 protein.
Length = 171
Score = 22.6 bits (46), Expect = 4.2
Identities = 7/12 (58%), Positives = 12/12 (100%)
Frame = +1
Query: 448 YQNVKEILLEIL 483
+QN+KE++LE+L
Sbjct: 127 FQNLKEVMLEVL 138
>AM158084-1|CAJ43388.1| 171|Apis mellifera globin 1 protein.
Length = 171
Score = 22.6 bits (46), Expect = 4.2
Identities = 7/12 (58%), Positives = 12/12 (100%)
Frame = +1
Query: 448 YQNVKEILLEIL 483
+QN+KE++LE+L
Sbjct: 127 FQNLKEVMLEVL 138
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 22.2 bits (45), Expect = 5.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 390 NSEANSDLIQLSNSPKEHHISKRERNFVGNISAY 491
+ E + D + S + IS N++ NIS Y
Sbjct: 301 SKERSRDKTERERSKERKIISSLSNNYISNISNY 334
>AY217747-1|AAP45005.1| 246|Apis mellifera short-chain
dehydrogenase/reductase protein.
Length = 246
Score = 21.8 bits (44), Expect = 7.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 442 CSLGELDSCIKSELA 398
C+L L C++SELA
Sbjct: 166 CALTTLTDCLRSELA 180
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 21.4 bits (43), Expect = 9.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 390 NSEANSDLIQLSNSPKEHHISKRERNFVGNISAY 491
+ E + D + S + IS N++ NIS Y
Sbjct: 63 SKERSRDKRERERSKERKIISSLSNNYISNISNY 96
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 21.4 bits (43), Expect = 9.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 390 NSEANSDLIQLSNSPKEHHISKRERNFVGNISAY 491
+ E + D + S + IS N++ NIS Y
Sbjct: 63 SKERSRDKRERERSKERKIISSLSNNYISNISNY 96
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,652
Number of Sequences: 438
Number of extensions: 4389
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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