Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19b04
(755 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 365 e-101
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 365 e-101
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 365 e-101
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 105 3e-23
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 71 9e-13
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 71 9e-13
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 61 1e-09
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 56 2e-08
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 56 3e-08
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 56 3e-08
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 56 3e-08
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 46 3e-05
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 46 3e-05
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 36 0.041
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 36 0.041
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 31 0.88
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 30 2.0
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 30 2.0
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 4.7
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 29 4.7
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 6.2
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 6.2
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 6.2
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 365 bits (899), Expect = e-101
Identities = 168/212 (79%), Positives = 188/212 (88%)
Frame = +1
Query: 1 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEV 180
EALD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+TTEV
Sbjct: 196 EALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEV 255
Query: 181 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 360
KSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NH
Sbjct: 256 KSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNH 315
Query: 361 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 540
PGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KP
Sbjct: 316 PGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKP 375
Query: 541 LCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 636
LCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 376 LCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 365 bits (899), Expect = e-101
Identities = 168/212 (79%), Positives = 188/212 (88%)
Frame = +1
Query: 1 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEV 180
EALD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+TTEV
Sbjct: 230 EALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEV 289
Query: 181 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 360
KSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NH
Sbjct: 290 KSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNH 349
Query: 361 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 540
PGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KP
Sbjct: 350 PGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKP 409
Query: 541 LCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 636
LCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 410 LCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 365 bits (899), Expect = e-101
Identities = 168/212 (79%), Positives = 188/212 (88%)
Frame = +1
Query: 1 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEV 180
EALD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+TTEV
Sbjct: 230 EALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEV 289
Query: 181 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 360
KSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NH
Sbjct: 290 KSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNH 349
Query: 361 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 540
PGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KP
Sbjct: 350 PGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKP 409
Query: 541 LCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 636
LCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 410 LCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 105 bits (253), Expect = 3e-23
Identities = 65/214 (30%), Positives = 113/214 (52%), Gaps = 2/214 (0%)
Frame = +1
Query: 1 EALDAILPP-ARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTE 177
E +D +LP R + P+R + + Y +GTV +G++E+G ++ G +V P +
Sbjct: 323 EFIDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLVVMPNKQPVQ 380
Query: 178 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 357
V + + V GDN+ F +K + EL+ G++ S ++ K F A+V+VL
Sbjct: 381 VLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFII-CSPDSLAKTGRVFDAEVLVLE 439
Query: 358 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 537
H I++GY+ VL +A + +D++TG+ K +K + I+ L +
Sbjct: 440 HRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKTGEKKRA--KFVKQDEKCIMRLESPE 497
Query: 538 PLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 636
P +E F+E+P LGRF +RD +T+A+G V+K V
Sbjct: 498 PFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical protein
K07A12.4b protein.
Length = 592
Score = 70.9 bits (166), Expect = 9e-13
Identities = 45/213 (21%), Positives = 95/213 (44%), Gaps = 1/213 (0%)
Frame = +1
Query: 1 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEV 180
E +D+ + P P+D PLR+ + DV K+ V G++E+G ++ V+ +++T
Sbjct: 377 ELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAAT 435
Query: 181 KSVEMHHEALQEAVPGDNVGFNVKNVSVKE-LRRGYVAGDSKNNPPKGAADFTAQVIVLN 357
+++ + GD + ++ E ++ G V + + + F +++
Sbjct: 436 VKECANNDGSRHCFAGDYILLTLQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFE 495
Query: 358 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 537
I G L H+ + C F + +++ G+ + P+ I G +A+V +
Sbjct: 496 IAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEY 555
Query: 538 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 636
+ +E+F LGR R T+A G+++ V
Sbjct: 556 DIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical protein
K07A12.4a protein.
Length = 610
Score = 70.9 bits (166), Expect = 9e-13
Identities = 45/213 (21%), Positives = 95/213 (44%), Gaps = 1/213 (0%)
Frame = +1
Query: 1 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEV 180
E +D+ + P P+D PLR+ + DV K+ V G++E+G ++ V+ +++T
Sbjct: 395 ELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAAT 453
Query: 181 KSVEMHHEALQEAVPGDNVGFNVKNVSVKE-LRRGYVAGDSKNNPPKGAADFTAQVIVLN 357
+++ + GD + ++ E ++ G V + + + F +++
Sbjct: 454 VKECANNDGSRHCFAGDYILLTLQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFE 513
Query: 358 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 537
I G L H+ + C F + +++ G+ + P+ I G +A+V +
Sbjct: 514 IAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEY 573
Query: 538 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 636
+ +E+F LGR R T+A G+++ V
Sbjct: 574 DIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 60.9 bits (141), Expect = 1e-09
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 4/155 (2%)
Frame = +1
Query: 46 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN----ITTEVKSVEMHHEALQ 213
P + D+Y + G+GT+ G + +G ++ I++ P + + +KS+ +
Sbjct: 372 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVG 431
Query: 214 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 393
G + F +K + K++R+G V D K P F A+++VL+HP I Y +
Sbjct: 432 IVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAM 490
Query: 394 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIK 498
L + + ++V RTG +V K I+
Sbjct: 491 LHIGSVRQTATLVSMGKEV-LRTGDRDKVQFKFIR 524
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Frame = +1
Query: 46 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN----ITTEVKSVEMHHEALQ 213
P + D+Y + G+GT+ G + +G ++ I++ P + + +KS+ +
Sbjct: 373 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVG 432
Query: 214 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 393
G + F +K + K++R+G V D K P F A+++VL+HP I Y +
Sbjct: 433 IVKCGQSASFALKKIPKKDVRQGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAM 491
Query: 394 L 396
L
Sbjct: 492 L 492
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 56.0 bits (129), Expect = 3e-08
Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 6/213 (2%)
Frame = +1
Query: 16 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TIVVFAPANITTEVKSV- 189
++P + ++P+ + VY I G GTV G++E G+LK G I + T VKSV
Sbjct: 242 VIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVI 300
Query: 190 ---EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 360
E + + +A PGD +G ++ + K++RRG V + + K AQ+ VL
Sbjct: 301 SGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE 359
Query: 361 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVNLVPSK 537
TP+ + + H+ + +G S + K + G++A V L +
Sbjct: 360 --SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESAEVELSLNS 409
Query: 538 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 636
+ +E P RF +R +T+ GV V
Sbjct: 410 QMFIE------PQQRFTIRKGAKTIGTGVFTDV 436
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 56.0 bits (129), Expect = 3e-08
Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 6/213 (2%)
Frame = +1
Query: 16 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TIVVFAPANITTEVKSV- 189
++P + ++P+ + VY I G GTV G++E G+LK G I + T VKSV
Sbjct: 243 VIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVI 301
Query: 190 ---EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 360
E + + +A PGD +G ++ + K++RRG V + + K AQ+ VL
Sbjct: 302 SGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE 360
Query: 361 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVNLVPSK 537
TP+ + + H+ + +G S + K + G++A V L +
Sbjct: 361 --SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESAEVELSLNS 410
Query: 538 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 636
+ +E P RF +R +T+ GV V
Sbjct: 411 QMFIE------PQQRFTIRKGAKTIGTGVFTDV 437
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 56.0 bits (129), Expect = 3e-08
Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 6/213 (2%)
Frame = +1
Query: 16 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-TIVVFAPANITTEVKSV- 189
++P + ++P+ + VY I G GTV G++E G+LK G I + T VKSV
Sbjct: 243 VIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVI 301
Query: 190 ---EMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 360
E + + +A PGD +G ++ + K++RRG V + + K AQ+ VL
Sbjct: 302 SGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE 360
Query: 361 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVNLVPSK 537
TP+ + + H+ + +G S + K + G++A V L +
Sbjct: 361 --SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESAEVELSLNS 410
Query: 538 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 636
+ +E P RF +R +T+ GV V
Sbjct: 411 QMFIE------PQQRFTIRKGAKTIGTGVFTDV 437
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 46.0 bits (104), Expect = 3e-05
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +1
Query: 1 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFA--PANITT 174
+ALD++ P R +P+ I G GTV VG +E GVLK G V + T
Sbjct: 224 DALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQT 283
Query: 175 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 294
+++ ++++E GD+ G + V ++RG AG
Sbjct: 284 TASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 46.0 bits (104), Expect = 3e-05
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +1
Query: 1 EALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFA--PANITT 174
+ALD++ P R +P+ I G GTV VG +E GVLK G V + T
Sbjct: 224 DALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQT 283
Query: 175 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 294
+++ ++++E GD+ G + V ++RG AG
Sbjct: 284 TASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVKRGMWAG 323
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Frame = +1
Query: 46 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITT----EVKSVEMHHEALQ 213
P ++++Y + +G V G + G L G V+ P T V S+ +A+
Sbjct: 402 PAFFTIEELYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVG 461
Query: 214 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 360
PG+ ++ LRRG V + + PP +FTA +++L H
Sbjct: 462 CVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLCH 509
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 35.5 bits (78), Expect = 0.041
Identities = 22/78 (28%), Positives = 33/78 (42%)
Frame = +1
Query: 16 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEM 195
I P R + + + + I G GTV G V GVL+ T + F N VK++E
Sbjct: 191 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 250
Query: 196 HHEALQEAVPGDNVGFNV 249
+ + + G F V
Sbjct: 251 WKQRVGQVAAGARAAFLV 268
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 35.5 bits (78), Expect = 0.041
Identities = 22/78 (28%), Positives = 33/78 (42%)
Frame = +1
Query: 16 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEM 195
I P R + + + + I G GTV G V GVL+ T + F N VK++E
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 209
Query: 196 HHEALQEAVPGDNVGFNV 249
+ + + G F V
Sbjct: 210 WKQRVGQVAAGARAAFLV 227
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 31.1 bits (67), Expect = 0.88
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Frame = -1
Query: 353 STMT*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPG-TASWRASWCISTDLT 177
ST T A+ + P ++ P + FT +S + S R S +S D T
Sbjct: 4 STATVAIIQSEPSTSSSSSPSSSRPEDGATVGNTFTQSSAVSESQSTSERTSRSVSPDST 63
Query: 176 SVVMLAGAKTTMVPGFN--TPVSTLPTGTVPIPPILY 72
V + + VP + VST PT +PPI Y
Sbjct: 64 PVRVTTSTLLSTVPTSQDISGVSTAPTTKATLPPITY 100
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 29.9 bits (64), Expect = 2.0
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Frame = -1
Query: 362 GWLSTMT*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTASWRASW---CI 192
G ST T A S AP GGLF + T P + T F T +P T
Sbjct: 446 GASSTTTPA--STAPTGGLFGAATTTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAAT 503
Query: 191 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIP 84
+T + L +T+ + P +T T T+P P
Sbjct: 504 TTTPATAATLGQTPSTVSATPSLPTTTSTTSTLPKP 539
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = -1
Query: 344 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVM 165
T A +AAP GGLF + T P T F T +P TA+ + T +
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527
Query: 164 LAGAKTTMVPGFNTPVSTLPT 102
+ T+ +P P PT
Sbjct: 528 TTTSTTSTLP---KPAEATPT 545
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 130 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 255
KPGTI F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -1
Query: 752 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 597
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -1
Query: 698 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 546
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 4.7
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -1
Query: 272 NSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTLPT-GT 96
++ T T T T +PGT + +T S GA TT PG V+ PT G
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTAAQTTTTTPST---PGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 95 VPIPPILYTSCRGRRRGL 42
PI+ T+ RG+
Sbjct: 2074 STTQPIITTTKGAEGRGV 2091
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 4.7
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -1
Query: 272 NSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTLPT-GT 96
++ T T T T +PGT + +T S GA TT PG V+ PT G
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTAAQTTTTTPST---PGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 95 VPIPPILYTSCRGRRRGL 42
PI+ T+ RG+
Sbjct: 2074 STTQPIITTTKGAEGRGV 2091
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 4.7
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = -1
Query: 272 NSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTLPT-GT 96
++ T T T T +PGT + +T S GA TT PG V+ PT G
Sbjct: 2017 SNFTTTTTTSTTTTTPGTGPTVTAAQTTTTTPST---PGAGTTGTPGTGPTVTAAPTNGI 2073
Query: 95 VPIPPILYTSCRGRRRGL 42
PI+ T+ RG+
Sbjct: 2074 STTQPIITTTKGAEGRGV 2091
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 394 LDCHTAHIACKFAEIKEKVDRRTGKSTE 477
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 394 LDCHTAHIACKFAEIKEKVDRRTGKSTE 477
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 394 LDCHTAHIACKFAEIKEKVDRRTGKSTE 477
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,221,460
Number of Sequences: 27780
Number of extensions: 411571
Number of successful extensions: 1351
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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