Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19b01
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   4.9  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    26   6.5  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   8.6  

>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 89  NYFNIYNTRFTC*IQINMLI 30
           N+F+IY T + C IQ++ L+
Sbjct: 111 NFFDIYQTNWHCSIQVSYLV 130


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 314 SLNLFDGHFSTRKDYIHSLSLHY 382
           SLN F G FST+KD +H++   Y
Sbjct: 443 SLNNFSG-FSTKKDVLHAIEKVY 464


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -1

Query: 273 ESAFSVIFAALFFWVDTRFALMFLNPITKHM*DTN*KALNFIKVEIFSCKIIFKFNRSTF 94
           +S+   + +++FF   +R    FLN +T  +   +  A + I  EI    I+F    S  
Sbjct: 9   QSSSKGLRSSIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTILFLSRESVR 68

Query: 93  LEL 85
           L +
Sbjct: 69  LAM 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,057
Number of Sequences: 5004
Number of extensions: 53908
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)