Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19b01
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1338 + 36411536-36411646,36411738-36411791,36411898-364119...    32   0.42 
09_01_0025 - 441528-444284                                             29   3.9  
10_08_0606 - 19164215-19164619                                         29   5.1  

>01_06_1338 +
           36411536-36411646,36411738-36411791,36411898-36411974,
           36412108-36412195,36412289-36412561,36412651-36412968
          Length = 306

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 644 WGQSNDLAVIPKGVARAYFRMDIDTTGWSILE 739
           WG     +V+PK V+ A  + ++D  GWSI E
Sbjct: 236 WGLQQGQSVLPKSVSEARLKENMDLFGWSIPE 267


>09_01_0025 - 441528-444284
          Length = 918

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 185 CFVIGFKNISAKRVSTQKNKAAKITLNADSGPSRWSNITITTWSLNLFD 331
           CF +  +  S  RV T         L+ D GP  W+ +  TT ++ L D
Sbjct: 288 CFDLHQRRGSVLRVGTATATEGGACLSCDYGPQPWTAVVATTKAILLLD 336


>10_08_0606 - 19164215-19164619
          Length = 134

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 278 PSRWSNITITTWSLNLFDGHFSTRKDY 358
           P   + ITITTW+L+L D H ++ +++
Sbjct: 103 PPSTAEITITTWTLDLQDDHSTSTQNW 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,056,779
Number of Sequences: 37544
Number of extensions: 318716
Number of successful extensions: 644
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)