Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19b01
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-2|CAA21539.1|  571|Caenorhabditis elegans Hypothetical ...    31   0.86 
U41025-3|AAA82348.1|  244|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AL032626-2|CAA21539.1|  571|Caenorhabditis elegans Hypothetical
           protein Y37D8A.2 protein.
          Length = 571

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 602 TVFYSEKTGYHIEYWGQSNDLAVIPKGVARAYFRMDIDTTGWSILE 739
           TV    +   H    G+  D  +  K +A AYF  +++ TGW+ LE
Sbjct: 25  TVCQKPEGDLHYFKEGRKTDEELCAKRLATAYFHDEVNQTGWAFLE 70


>U41025-3|AAA82348.1|  244|Caenorhabditis elegans Hypothetical
           protein C01C4.2 protein.
          Length = 244

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 694 STGDSFRDHGEVVALTPIFNVISCFLRIKYCGCVVTVLLTSFHLSR 557
           S+ D FR H  +V   P  NV+  +++ K C  V      SF ++R
Sbjct: 4   SSPDHFRPHDSLVNAAPALNVLH-YMKPKLCAYVGAYRKISFEVNR 48


>Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical protein
            F14B4.3 protein.
          Length = 1127

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -3

Query: 604  CGCVVTVLLTS---FHLSRKKRQDS*YTKYTEDVR 509
            CG +++VL++S    HL +KKR+D     YTE  R
Sbjct: 1047 CGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQR 1081


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,452,815
Number of Sequences: 27780
Number of extensions: 310419
Number of successful extensions: 726
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)