Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19a24
(575 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 29 0.49
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 29 0.64
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 28 0.85
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 28 0.85
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 2.6
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 26 3.4
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 26 3.4
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 26 4.5
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy... 26 4.5
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 4.5
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 6.0
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 7.9
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 25 7.9
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 25 7.9
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 29.1 bits (62), Expect = 0.49
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = -2
Query: 562 FKFLIYKIYVISLHVSQIKYIWQSLVSLITVNCGSDIQTELCLSKHLKICSLTSD 398
F + I ++ ++S I +W SL+ +I+ + GSD + CL K+ ++S+
Sbjct: 449 FVYCIERLQIVSPSYEDIISLWSSLMIIISSSLGSDEIYKACLLFLRKLEDVSSE 503
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 28.7 bits (61), Expect = 0.64
Identities = 21/89 (23%), Positives = 37/89 (41%)
Frame = +3
Query: 243 QKTHMDDNIDWSKIEQDNVIVCPICQRDNFMSVNSCLKCPSCNVQIKTSMQTSEVKEHIF 422
QK + K +++ V P D F+S+ C++ + TS T + E +
Sbjct: 206 QKNMAGKLLSTMKCDENEVQEQPSISHDTFLSL-------PCHISMHTSYMTQGILEGLT 258
Query: 423 KCLDKHNSVCISDPQFTVIKDTSDCHIYL 509
+ + KH+ V D ++ I S YL
Sbjct: 259 QKISKHSDVLNRDAMYSKISRISRLPNYL 287
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 28.3 bits (60), Expect = 0.85
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 384 TSMQTSEVKEHIFKCLDKHNSVCISDPQFTVIKDTSDCHIYLICETCNE 530
T+MQT+ V+ + CLD+ N + S QF + D + E+ E
Sbjct: 376 TAMQTNFVRTNCMDCLDRTNVIQTSIAQFILNMQLHDIGVLSSSESLEE 424
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.3 bits (60), Expect = 0.85
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +3
Query: 33 RNKVQKCRGTLQDKFRELTFEKDNMCNVLKELYKEMIDFSEDILEIEDNILQEIKN 200
+ K+Q T+Q+ E+T K+N L + + D SE+I ++ +N+L E K+
Sbjct: 1508 KEKIQVDESTIQELDHEITASKNNYEGKLNDKDSIIRDLSENIEQL-NNLLAEEKS 1562
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 26.6 bits (56), Expect = 2.6
Identities = 10/43 (23%), Positives = 26/43 (60%)
Frame = +3
Query: 72 KFRELTFEKDNMCNVLKELYKEMIDFSEDILEIEDNILQEIKN 200
+ +EL EK+N +++E +++ D + ++L + + ++KN
Sbjct: 989 ELKELLEEKENALIMMEEEMRQVNDANTELLRVNATLKSQLKN 1031
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 3.4
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +3
Query: 351 LKCPSCNVQIKTSMQTSEVKEHIFKCLDKHNS 446
++CP C + + SE + H+ CL ++S
Sbjct: 168 VECPVCYAPLSSFKTLSERESHVANCLSNNSS 199
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 291 DNVIVCPICQRDNFMSVNSCLKCPSCN 371
D V +C +CQR + N + C CN
Sbjct: 188 DMVTLCSVCQRGHSPLSNRIVFCDGCN 214
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 177 CLQFLKYPLRNL-SFPYIVPLIHYTYYPFQKLI 82
CL ++ R + SFP+++ H +YP Q +
Sbjct: 40 CLVLIRPLARKIGSFPFLILTFHTLFYPIQNTV 72
>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +3
Query: 333 MSVNSCLKCPSCNVQIKTSMQTSEVKEHIFKCLDKHNS 446
+S+N CL C C +T + + + + K L+ S
Sbjct: 59 ISLNDCLACSGCITSAETVLVNLQSYQEVLKHLESRKS 96
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 132 YIVPLIHYTYYPFQKLIREIYLAAFHG--IFVPCFYSY 25
++VP+I YPF KL E +A G FV YSY
Sbjct: 1211 WVVPIISGVEYPFDKLCTEPKIAVKIGDDEFVVNCYSY 1248
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 6.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3
Query: 306 CPICQRDNFMSVNSCLKC 359
CP+C NF SC +C
Sbjct: 349 CPMCGFSNFQRRTSCFRC 366
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 69 DKFRELTFEKDNMCNVLKELYKEMID 146
D + + +EK+ CNVL+ L EM D
Sbjct: 2149 DSYMGVDYEKEFECNVLEPLDTEMED 2174
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 118 NTLHILSFSKVNSRNLSCSVPRHFCTL 38
N+L +L S N N+S S+P C L
Sbjct: 407 NSLSLLDISTGNISNMSLSIPPSLCFL 433
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 372 VQIKTSMQTSEVKEHIFKCLDKHNSVCISD 461
+ IK T EV +H+F+ K + ISD
Sbjct: 646 LNIKPEQMTPEVWDHVFRQAPKPKNTSISD 675
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,857
Number of Sequences: 5004
Number of extensions: 43933
Number of successful extensions: 162
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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