Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19a24
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0327 + 20298659-20298724,20300119-20300332,20300556-203006...    33   0.22 
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558...    29   2.7  
07_01_0346 - 2501825-2501908,2502143-2502244,2502623-2502646,250...    29   3.5  
02_05_1183 + 34788219-34788533,34788733-34788930,34789010-347893...    29   3.5  
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661...    28   6.1  

>05_04_0327 +
           20298659-20298724,20300119-20300332,20300556-20300632,
           20301067-20301177,20301283-20301444
          Length = 209

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 16/84 (19%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
 Frame = +3

Query: 306 CPICQRDNFMSVNSCLKCPSCNVQI---KTSMQTSEVKEHIFKC-LDKHNSVCISDPQFT 473
           CP+C++      ++ + C  C +++   +  +    ++E +    +D  +  C S P+F 
Sbjct: 126 CPVCKQGELRETHNLVYCTMCKLRLDLGEDKINLEFLRERLANVHMDHLDRGCKSAPKFC 185

Query: 474 VIKDTSDCHIYLICETCNEMTYIL 545
           +        +Y+ CE CN    ++
Sbjct: 186 LQTMFELTALYIQCEECNTFDVVI 209


>06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,
            5588428-5588484,5588663-5588800,5588901-5588966,
            5589234-5589452,5589522-5589737,5589813-5589884,
            5589952-5590205,5590356-5590525,5590840-5591029,
            5592211-5592331,5592838-5592921,5593003-5593365,
            5594530-5594724,5594938-5595933,5596329-5596370
          Length = 1240

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
 Frame = +3

Query: 246  KTHMDDNI---DWSKIEQDNVIVCPICQRDNFMSVNSCLKCPSCNVQIKTSMQTSEVK-E 413
            K   D NI   D +K  + N + C IC R   + +N    C SC   +      S     
Sbjct: 858  KVSADANIGSFDLAKFSKKNALPCDICMRSETV-LNRIFVCSSCKAAVHLDCYRSVTNPT 916

Query: 414  HIFKCLDKHNSVCISDPQFTVIKDTSDCH----IYLICETCN 527
              +KC      +C   P   V    SDC       L C+ C+
Sbjct: 917  GPWKC-----ELCQEMPSDVVAGSQSDCDGSKPCLLQCDLCH 953


>07_01_0346 -
           2501825-2501908,2502143-2502244,2502623-2502646,
           2502693-2502819,2503122-2505109,2505804-2505821
          Length = 780

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +3

Query: 51  CRGTLQDKFRELTFEKDNMCNVLKELYKEMI----DFSEDILEIEDNIL 185
           C  +LQD+     +E+ ++ N LK+ +KE +       E++++I D +L
Sbjct: 210 CIKSLQDELERKLYEQSSIVNTLKKNWKETVVQCGAIHEELIDIADMLL 258


>02_05_1183 +
           34788219-34788533,34788733-34788930,34789010-34789359,
           34789463-34789619
          Length = 339

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 450 CISDPQFTVIKDTSDCHIYLICETCNEM 533
           C SDP+F   KD S  H+Y   +T  EM
Sbjct: 155 CWSDPEFCRQKDVSLLHMYCYAKTMAEM 182


>03_02_0232 +
           6614784-6614882,6616145-6616477,6616708-6616967,
           6617328-6617469,6617567-6617938,6618056-6618187,
           6618907-6619035,6619125-6621188
          Length = 1176

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 243 QKTHMDDNIDWSKIEQDNVIVCPICQRDNFMSVNSC 350
           + T+  D+ D +  E+DN  V  +C  D F+   +C
Sbjct: 559 ESTNTPDSRDSASEEEDNSTVVDLCSPDTFVDQTAC 594


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,723,030
Number of Sequences: 37544
Number of extensions: 229792
Number of successful extensions: 656
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)