Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19a24
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    32   0.25 
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    31   0.78 
U41995-7|AAP68946.1|  405|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical ...    29   3.1  
U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory recep...    28   5.5  
U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant respons...    28   5.5  
AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin...    28   5.5  
AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin...    28   5.5  
AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin...    28   5.5  
AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z34976-1|CAA84428.1|  681|Caenorhabditis elegans Cog2 protein pr...    27   7.2  
U61947-9|AAB03139.2|  681|Caenorhabditis elegans Conserved oligo...    27   7.2  
Z81545-4|CAB04439.1|  352|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z78418-5|CAB01694.2|  361|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of...    27   9.5  
AF016429-3|AAB65366.1|  383|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
           protein Y73F8A.5 protein.
          Length = 1019

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 282 IEQDNVIVCPICQRDNFMSVNSCLKCP 362
           +E++ + VC  C++D F   NSC +CP
Sbjct: 377 MEKNKLGVCEFCKKDYFSDGNSCSRCP 403


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical protein
            F29G6.1 protein.
          Length = 1170

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
 Frame = +3

Query: 84   LTFEKDNMCNVLKELYKEMI-DFSEDILEIEDNILQEIKNXXXXXXXXXXXXXYQKTHMD 260
            LT +K  +CN +KE       ++S        NI+ E +                K   D
Sbjct: 854  LTIDKFEVCNEVKECNNACPKEYSPVCASNGQNIVNECELDKIRCLVENNVTTGDKLVKD 913

Query: 261  DNIDWSKIEQDNVIV-CPICQRDNFMSVNSCLKCPSCNVQIKTSMQTSEV 407
             + +  +IE  ++ V  P+C  +     N CL   +  +Q+K + +T +V
Sbjct: 914  YDGECCRIENCDISVFSPVCDTEGVTHANMCLMDQNACIQMKKNKKTIQV 963


>U41995-7|AAP68946.1|  405|Caenorhabditis elegans Hypothetical
           protein E02C12.8c protein.
          Length = 405

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 96  KDNMCNVLKELYKEMIDFSEDILEIEDNILQEIKN 200
           +++  + LKE+  +MI   EDILEI DN L    +
Sbjct: 367 EEDKVSALKEVKTKMIAMMEDILEIHDNNLNHFSD 401


>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical protein
            ZC53.4 protein.
          Length = 1410

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 321  RDNFMSVNSCLKCPSCNVQIKT-SMQTSEVKEH 416
            +D +   N   +CP C VQ  T  M+T++V++H
Sbjct: 963  QDEWTEFNKNQECPHCQVQYNTEDMKTTKVRDH 995


>AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical
           protein F43C11.8 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/84 (23%), Positives = 36/84 (42%)
 Frame = +3

Query: 279 KIEQDNVIVCPICQRDNFMSVNSCLKCPSCNVQIKTSMQTSEVKEHIFKCLDKHNSVCIS 458
           K+ Q+++I+CP C+    +S    L+     +Q     +T   ++       K  S   +
Sbjct: 53  KLLQNSMILCPFCREATNVSTVKDLQKNFALLQAVEHAKTRTEEKDPIDSPPKCASHQYN 112

Query: 459 DPQFTVIKDTSDCHIYLICETCNE 530
             +F  I+ T      L+C TC E
Sbjct: 113 FAEFVCIEPTCSSSDKLMCRTCEE 136


>U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory receptor
           Odr-10 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 126 VPLIHYTYYPFQKLIREIYLAAFHGIFVPCF 34
           V  I Y YY ++  +R IYL    G FV  F
Sbjct: 180 VSYIAYVYYQYENGVRHIYLKNLLGCFVHYF 210


>U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant response
           abnormal protein10 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 126 VPLIHYTYYPFQKLIREIYLAAFHGIFVPCF 34
           V  I Y YY ++  +R IYL    G FV  F
Sbjct: 180 VSYIAYVYYQYENGVRHIYLKNLLGCFVHYF 210


>AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin
           ring protein GRIP-1 protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 366 CNVQIKTSMQTSEVKEHIFKCLDKHNSVCISDPQFT 473
           C + ++  M+T  +KEH+ K     +   +SDP+FT
Sbjct: 558 CGIVMRMVMETGRLKEHVLK---STSFFFLSDPRFT 590


>AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform b protein.
          Length = 963

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 366 CNVQIKTSMQTSEVKEHIFKCLDKHNSVCISDPQFT 473
           C + ++  M+T  +KEH+ K     +   +SDP+FT
Sbjct: 558 CGIVMRMVMETGRLKEHVLK---STSFFFLSDPRFT 590


>AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform a protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 366 CNVQIKTSMQTSEVKEHIFKCLDKHNSVCISDPQFT 473
           C + ++  M+T  +KEH+ K     +   +SDP+FT
Sbjct: 558 CGIVMRMVMETGRLKEHVLK---STSFFFLSDPRFT 590


>AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical
           protein R09B5.11 protein.
          Length = 516

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 329 VVSLTNWTNNYIILLNF*PVNVVVH 255
           V + +NW  N+++ L F P+N ++H
Sbjct: 446 VSATSNWVANWMVGLTFLPINNIIH 470


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
           protein F53B6.2a protein.
          Length = 1045

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -2

Query: 556 FLIYKIYVISLHVSQIKYIWQSLVSLITVNCGSDIQTEL--CLSKHLKICSLTSDVC 392
           FL++ + + S HV  + +   S  S  T  CG  +  +L  CL+      S+   VC
Sbjct: 9   FLLFYLLIASFHVDALSWAAWSPWSSCTKTCGGGVSRQLRRCLTSKCSGESVRFKVC 65


>Z34976-1|CAA84428.1|  681|Caenorhabditis elegans Cog2 protein
           protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 36  NKVQKCRGTLQDKFRELTFEKDNMCNVLKELYKEMIDFSEDILEIEDNI 182
           NK+++    + D+F+E T E   M   +++   E+    E  +EI D I
Sbjct: 95  NKIEQDINRIWDEFKESTRESVGMAERIEQKCDELCSNREKQIEIRDRI 143


>U61947-9|AAB03139.2|  681|Caenorhabditis elegans Conserved
           oligomeric golgi (cog)component protein 2 protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 36  NKVQKCRGTLQDKFRELTFEKDNMCNVLKELYKEMIDFSEDILEIEDNI 182
           NK+++    + D+F+E T E   M   +++   E+    E  +EI D I
Sbjct: 95  NKIEQDINRIWDEFKESTRESVGMAERIEQKCDELCSNREKQIEIRDRI 143


>Z81545-4|CAB04439.1|  352|Caenorhabditis elegans Hypothetical
           protein F49H6.4 protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -3

Query: 156 PLRNLSFPYIVPLIHYT--YYPFQKLIREIYLAAFHGI 49
           PL  +S P I+  I Y+  YY  + +   I  AAFHG+
Sbjct: 266 PLMFISGPLIILAIAYSFGYYSQEMMNLSIVCAAFHGV 303


>Z78418-5|CAB01694.2|  361|Caenorhabditis elegans Hypothetical
           protein F25D7.2 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 384 TSMQTSEVKEHIFKCLDKHNSV 449
           TS    EVKEH+  CL+ H  V
Sbjct: 38  TSWTIKEVKEHVKNCLNNHPEV 59


>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
           constitutive dauerformation protein 2 protein.
          Length = 1446

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 51  CRGTLQDKFRELTFEKDNMCNVLKELYKEMIDFSEDI 161
           C  +  +++R  T+E   +CN  KE+Y    D  E+I
Sbjct: 888 CPSSSTNQYRNFTYEPFCLCNNGKEIYDVYNDTCEEI 924


>AF016429-3|AAB65366.1|  383|Caenorhabditis elegans Hypothetical
           protein T21H3.5 protein.
          Length = 383

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 147 NLSFPYIVPLIHYTYYPFQKLIREIYL 67
           N++   + PL+H TY+P + LI  +++
Sbjct: 60  NMALAVLFPLVHPTYFPARGLIYMVFV 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,211,809
Number of Sequences: 27780
Number of extensions: 249607
Number of successful extensions: 854
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)