Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19a23
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|ch... 58 1e-09
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p... 43 4e-05
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 41 2e-04
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|... 36 0.006
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 28 1.2
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.1
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 27 3.6
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 4.8
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 25 8.4
>SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 129
Score = 58.0 bits (134), Expect = 1e-09
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = +1
Query: 325 TYTAEEVSKHGDKNSFWVTYKHGVYDVTKFLPSHPGGEQIM--NAGGLSIEPFWNVYGMH 498
T T EEV KH ++ ++ K VYD++KFL +HPGGE+++ AG + PF +V
Sbjct: 5 TITVEEVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDV---G 61
Query: 499 KTPEIYKLLESYRIGNL 549
+ + +LLE + IGNL
Sbjct: 62 HSEDAQELLEKFYIGNL 78
>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 145
Score = 43.2 bits (97), Expect = 4e-05
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Frame = +1
Query: 274 QSNDVVIEAGEKLPDLPT---YTAEEVSKHGDKNSFWVTYKHGVYDVTKFLPSHP-GGEQ 441
Q D ++ +G+ L + + TAEE++KH + W+ + VY+VT +LP HP G ++
Sbjct: 51 QDWDALVASGKNLSGVESPISVTAEELAKHCSPDDCWMAIRGKVYNVTAYLPYHPVGPKK 110
Query: 442 IMNAGGL-SIEPFWNVYGMHKTPEIYK 519
I+ G+ + +P+ + E+ K
Sbjct: 111 ILKHSGVDATKPYLKHHDWVNEEELLK 137
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 41.1 bits (92), Expect = 2e-04
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +1
Query: 331 TAEEVSKHGDKNSFWVTYKHGVYDVTKFLPSHPGGEQ 441
T EE++KH K W+ + VY+V+ +LP HP G++
Sbjct: 75 TKEELAKHKTKEDCWIAIRGKVYNVSAYLPYHPAGQK 111
>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 35.9 bits (79), Expect = 0.006
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 328 YTAEEVSKHGDKNSFWVTYKHGVYDVTKFLPSHPGGEQIM 447
+ EE+ +H + ++ VYDV+ F HPGG IM
Sbjct: 6 FEPEEIVEHNNSKDMYMVINGKVYDVSNFADDHPGGLDIM 45
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +1
Query: 136 DKKYRFDESEGFLFRTKGKILTAAVFSSVLIGAAVNEQIKDKNVK---SQSNDVVIEAGE 306
+KKY + + FRTK L AAV+SS + A + ++K K + + S++ V + G
Sbjct: 4 NKKYSYGTAG---FRTKASDLEAAVYSSGVAAALRSMELKGKTIGVMITASHNPVEDNGV 60
Query: 307 KLPD 318
K+ D
Sbjct: 61 KIID 64
>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 340
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 241 NEQIKDKNVKSQSNDVVI-EAGEKLPDLPTYTAEEVSKHGDKNSFW 375
+ +I D ++ +S+ V + E K ++ TY++ +++K K+S W
Sbjct: 290 SSKISDGDIPYKSHQVFLQELQNKYSEIKTYSSNKLNKSSIKSSLW 335
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 122 TEDNPMYLFLRNTVPSSIFFKDISK*ISQ 36
TED Y+F RN+ S+ + DIS +S+
Sbjct: 427 TEDGKFYVFSRNSENMSVRYPDISVSVSK 455
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 212 KTAAVRIFPLVLNKKPSLSSNLYFLSVIVETEDNPM-YLFLRNTVPSSIFFKDIS 51
K A+ IF L+ NK+ S NL ++ +DN + Y+ V S K I+
Sbjct: 386 KLASTLIFKLINNKQEPESRNLLLKNLFFSEKDNVLTYILQDQAVGPSFIHKVIT 440
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 474 WLYTESPCVHDLFPSRMGRKEFCY-IINTMFVCHPK 370
W Y S CV++ PS + R+ Y + HP+
Sbjct: 330 WCYETSICVNEQIPSELPRETLYYEFFAPDYTLHPR 365
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,046
Number of Sequences: 5004
Number of extensions: 61838
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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