Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19a23
(732 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529 52 5e-07
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471... 52 5e-07
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295... 52 5e-07
05_01_0065 + 461182-461271,462222-462288,462408-462664 50 3e-06
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344... 49 3e-06
02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478 49 3e-06
01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592 49 4e-06
09_02_0530 + 10285844-10287217 44 1e-04
12_02_0170 - 14871985-14872110,14872239-14872454,14872541-148725... 38 0.006
07_01_0887 + 7380332-7380370,7381286-7381640,7382752-7382886,738... 38 0.006
08_02_1363 + 26410606-26410680,26411728-26411843,26411927-264119... 38 0.008
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 35 0.077
11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788 29 2.9
03_04_0017 - 16468486-16468505,16468597-16468807,16469522-164702... 28 6.6
01_06_0371 + 28819035-28819322,28820541-28820595,28821179-288213... 28 8.8
>12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529
Length = 150
Score = 52.0 bits (119), Expect = 5e-07
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Frame = +1
Query: 328 YTAEEVSKHGDKNSFWVTYKHGVYDVTKFLPSHPGGEQIM---NAGGLSIEPFWNVYGMH 498
++A +V H + WV VYDVTKFL HPGGE ++ +A G + E F +V H
Sbjct: 13 FSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFEDV--GH 70
Query: 499 KTPEIYKLLESYRIGNL 549
T I ++ +Y IG++
Sbjct: 71 STSAI-SMMNNYLIGSI 86
>08_02_0958 -
23044708-23046045,23046131-23046363,23047059-23047199,
23047296-23048334
Length = 916
Score = 52.0 bits (119), Expect = 5e-07
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 328 YTAEEVSKHGDKNSFWVTYKHGVYDVTKFLPSHPGGEQ--IMNAGGLSIEPFWNVYGMHK 501
+T EV KH ++S W+ VYD T FL HPGG ++NAG E F ++
Sbjct: 544 FTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAIH---- 599
Query: 502 TPEIYKLLESYRIGNL 549
+ + LL++YRIG L
Sbjct: 600 SDKAKALLDTYRIGEL 615
>08_02_0956 +
23026108-23027146,23027255-23027395,23029334-23029566,
23029652-23030989
Length = 916
Score = 52.0 bits (119), Expect = 5e-07
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 328 YTAEEVSKHGDKNSFWVTYKHGVYDVTKFLPSHPGGEQ--IMNAGGLSIEPFWNVYGMHK 501
+T EV KH ++S W+ VYD T FL HPGG ++NAG E F ++
Sbjct: 544 FTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAIH---- 599
Query: 502 TPEIYKLLESYRIGNL 549
+ + LL++YRIG L
Sbjct: 600 SDKAKALLDTYRIGEL 615
>05_01_0065 + 461182-461271,462222-462288,462408-462664
Length = 137
Score = 49.6 bits (113), Expect = 3e-06
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Frame = +1
Query: 328 YTAEEVSKHGDKNSFWVTYKHGVYDVTKFLPSHPGGEQIM--NAGGLSIEPFWNVYGMHK 501
YT EEV+KH K+ W+ VY+V+KFL HPGG+ ++ + G + + F +V H
Sbjct: 9 YTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDV--GHS 66
Query: 502 TPEIYKLLESYRIGNL 549
T +++ Y +G++
Sbjct: 67 T-TARAMMDEYYVGDI 81
>02_05_0889 -
32532495-32533832,32533919-32534151,32534321-32534461,
32534564-32535521
Length = 889
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/76 (42%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 328 YTAEEVSKHGDKNSFWVTYKHGVYDVTKFLPSHPGG-EQIM-NAGGLSIEPFWNVYGMHK 501
YT EV +H S W+ VYD T FL HPGG + IM NAG E F ++
Sbjct: 516 YTMSEVRRHTTPESAWIIVHGHVYDCTGFLKDHPGGADSIMINAGTDCTEEFDAIH---- 571
Query: 502 TPEIYKLLESYRIGNL 549
+ + LLE YRIG L
Sbjct: 572 SDKARGLLEMYRIGEL 587
>02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478
Length = 138
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +1
Query: 328 YTAEEVSKHGDKNSFWVTYKHGVYDVTKFLPSHPGGEQIMNA-GGLSIEPFWNVYGMHKT 504
Y+ +EVSKH D+ W+ VYDV+ F+ HPGG++++ A G +N G T
Sbjct: 8 YSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFNDIGHTAT 67
Query: 505 PEIYKLLESYRIGNL 549
+ +L+ Y IG +
Sbjct: 68 AK--ELMPQYCIGEV 80
>01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592
Length = 135
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +1
Query: 331 TAEEVSKHGDKNSFWVTYKHGVYDVTKFLPSHPGGEQIM 447
T EEVSKH K+ W+ VY+VTKFL HPGG+ ++
Sbjct: 8 TLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVL 46
>09_02_0530 + 10285844-10287217
Length = 457
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 331 TAEEVSKHGDKNSFWVTYKHGVYDVTKFLPSHPGGE-QIMNAGGLSIEPFWNVYGMHKTP 507
++EE+ H ++ W++ VYDVT ++P HPGG+ ++ G + + + + P
Sbjct: 20 SSEELRAHASRDDLWISISGDVYDVTAWVPHHPGGDIPLLTLAG---QDATDAFAAYHPP 76
Query: 508 EIYKLLESYRIGNL 549
LL + +G L
Sbjct: 77 SARPLLGRFLVGRL 90
>12_02_0170 -
14871985-14872110,14872239-14872454,14872541-14872588,
14872960-14873061,14873144-14873254,14873388-14873483,
14873579-14873697,14874014-14874095,14874149-14874218,
14874320-14874382,14874487-14874602,14874731-14874817
Length = 411
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 595 KEPVRDNRLIVKTAKPFNAEIPAKYQIKFFDTPNELFYVRQHMPVP 732
+EP R L + +PFNAE + + + TP +LF R H P+P
Sbjct: 16 QEPTRHPSLRINAKEPFNAEATRRDLVASYITPVDLFLKRNHGPIP 61
>07_01_0887 +
7380332-7380370,7381286-7381640,7382752-7382886,
7383029-7383138
Length = 212
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 337 EEVSKHGDKNSFWVTYKHGVYDVTKFLPSHPGG-EQIMNAGG 459
EEV +H +S W K VY++ ++ HPGG + +M A G
Sbjct: 145 EEVKQHKTGDSIWTVLKGRVYNIAPYMKFHPGGVDMLMKAAG 186
>08_02_1363 +
26410606-26410680,26411728-26411843,26411927-26411989,
26412067-26412103,26412193-26412274,26412747-26412865,
26412942-26413037,26413609-26413719,26413792-26413893,
26414053-26414100,26414230-26414445,26414547-26414675
Length = 397
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 598 EPVRDNRLIVKTAKPFNAEIPAKYQIKFFDTPNELFYVRQHMPVP 732
EP R L + + +PFNAE + + TP + FY R H P+P
Sbjct: 13 EPPRHPALKINSKEPFNAEPHRSALVSSYITPVDFFYKRNHGPIP 57
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 34.7 bits (76), Expect = 0.077
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 394 VYDVTKFLPSHPGGEQIMNAGG 459
VYDVT ++ HPGG++I+N G
Sbjct: 41 VYDVTSYVEEHPGGDEILNNAG 62
>11_04_0313 + 16270807-16272271,16272713-16274140,16274289-16274788
Length = 1130
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 257 IKMSNHNLMMLLLKLERNYLIFQHIQQKKSANTETKI 367
++ + NL+M+ + +ERN + ++ Q KK NT +I
Sbjct: 173 LEQQDGNLLMIAMGIERNLDMLEYHQVKKDENTSIRI 209
>03_04_0017 -
16468486-16468505,16468597-16468807,16469522-16470214,
16470338-16470398,16470624-16470706
Length = 355
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 262 NVKSQSNDVVIEAGEKLPDLPTYTAEEVSKHGD 360
++ + ND + E GE+ DLP ++ EEV K D
Sbjct: 114 SIGTLGNDELPEQGEEEEDLPEFSVEEVRKLQD 146
>01_06_0371 + 28819035-28819322,28820541-28820595,28821179-28821354,
28821481-28821702,28821796-28822034,28822107-28822632,
28822726-28822999,28823098-28823737,28823833-28824061,
28824299-28824565,28824700-28824963,28825045-28825689
Length = 1274
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 408 CYIINTMFVCHPKTIFVSVFADFFCCI 328
C+ + FV H KT F VF FF +
Sbjct: 952 CFYVGAQFVRHNKTTFGDVFKVFFALV 978
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,411,507
Number of Sequences: 37544
Number of extensions: 363271
Number of successful extensions: 938
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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