Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19a23
         (732 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   6.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.8  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 359 SPCLLTSSAVYVGR-SGNFSPASITTSLDCDLTF 261
           S    T+S  Y G  +GNFS  SIT  L  ++ F
Sbjct: 200 SEIFYTTSQQYYGHFAGNFSSISITFKLAREMGF 233


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 470 SILSPPAFMICSPPGW 423
           S+L  P  M+CS P W
Sbjct: 538 SLLGGPLVMVCSAPVW 553


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 85  VFLRNRYIGLSSVSTITDK 141
           +F+ N YI L   +T TDK
Sbjct: 622 LFINNNYINLVRPNTFTDK 640


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 359 SPCLLTSSAVYVGRSGNFSPASITTS 282
           SP    SS  + G S + SPA+ TTS
Sbjct: 61  SPSPTGSSPQHSGSSASTSPAARTTS 86


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = -1

Query: 438 FPSRMGRKEFCYIINTMFVCHPKTIFVSV 352
           +PS+M R+    +I  +++C     F ++
Sbjct: 154 YPSKMSRRRAAVLIAIVWICSSAISFPAI 182


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 412  FLPSHPGGEQIMNAGGLSIEPFWNVYGMHKTPEI 513
            ++PS P    I+   G  I PF   +  H+  EI
Sbjct: 959  YMPSEPKAPMILVGPGTGIAPF-RGFWHHRLAEI 991


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,605
Number of Sequences: 438
Number of extensions: 4392
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)