Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19a21
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical p...    28   6.0  
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    28   6.0  
U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...    28   6.0  
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra...    28   6.0  
Z68220-6|CAA92486.3|  293|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
            ZC101.2f protein.
          Length = 2389

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 346  PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 224
            P A  P  S APG  + F  NC A+ D  +   W FR  + P
Sbjct: 1702 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1741


>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 346  PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 224
            P A  P  S APG  + F  NC A+ D  +   W FR  + P
Sbjct: 1795 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1834


>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
            ZC101.2a protein.
          Length = 2482

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 346  PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 224
            P A  P  S APG  + F  NC A+ D  +   W FR  + P
Sbjct: 1795 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1834


>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
            ZC101.2f protein.
          Length = 2389

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 346  PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 224
            P A  P  S APG  + F  NC A+ D  +   W FR  + P
Sbjct: 1702 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1741


>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 346  PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 224
            P A  P  S APG  + F  NC A+ D  +   W FR  + P
Sbjct: 1795 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1834


>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
            ZC101.2a protein.
          Length = 2482

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 346  PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 224
            P A  P  S APG  + F  NC A+ D  +   W FR  + P
Sbjct: 1795 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1834


>Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical
           protein C08H9.3a protein.
          Length = 758

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 566 YVVFCFFFFVKHLSEKGILICHLSLNLLGL 655
           +  FCFF+F  H+ EK I++  + + +  +
Sbjct: 358 FSAFCFFYFGYHVHEKAIILVTVPMTVFAI 387


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 26  KRRHNRHARHIPLGPR-LLKPAQHPTRCPQGRY 121
           +RR NR A+ + + PR +    +   RCPQ RY
Sbjct: 34  RRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRY 66


>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 26  KRRHNRHARHIPLGPR-LLKPAQHPTRCPQGRY 121
           +RR NR A+ + + PR +    +   RCPQ RY
Sbjct: 34  RRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRY 66


>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
            proteoglycan protein.
          Length = 2481

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 346  PSAVEPA-STAPGGTSPFVENCQANMDGTSTSNWSFRTSSPP 224
            P A  P  S APG  + F  NC A+ D  +   W FR  + P
Sbjct: 1794 PVATPPLLSVAPGSPARF--NCVAHSDTPARIRWGFREENGP 1833


>Z68220-6|CAA92486.3|  293|Caenorhabditis elegans Hypothetical
           protein T20D3.3a protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 722 YKCLKNNLTS*NMSYHKTNSHEIILIDLMINDKLK 618
           ++C +N LT    S     +HEI+LID ++   +K
Sbjct: 67  FECAENILTGLRESTKNNRTHEIMLIDSLLQCSIK 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,397,276
Number of Sequences: 27780
Number of extensions: 390082
Number of successful extensions: 1105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)