Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19a11
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 46 3e-05
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 42 4e-04
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 34 0.10
04_04_1503 + 34031540-34031562,34031682-34032212,34032417-340325... 31 0.95
02_03_0352 + 18050004-18050079,18050321-18050499,18050695-18050724 31 0.95
02_04_0366 - 22389591-22390527,22391296-22391429,22391762-223918... 30 2.2
01_06_1683 - 39134826-39135664,39136202-39136278,39136391-391364... 30 2.2
01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205 29 2.9
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792... 29 3.8
04_04_0155 - 23153314-23154204,23156887-23157104,23157284-231573... 29 3.8
03_02_1025 + 13289146-13289586,13291882-13292087,13292174-132923... 29 3.8
01_06_0677 - 31104736-31104897,31105046-31105234,31105313-311054... 29 3.8
01_03_0231 + 14014243-14014390,14015053-14015141,14017859-140179... 29 3.8
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 46.0 bits (104), Expect = 3e-05
Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Frame = +3
Query: 339 WLSFS--LILEDEIPKSVEYLDKTLGPLTYLVGETLSVSDFAVFSVLY-VSSKFKEISKV 509
WL ++ +L E + ++D L T+LVG L+++D V+S L + +++ + K
Sbjct: 80 WLEYAPTFLLGSEFEVACSFVDGYLMSRTFLVGHVLTIADITVWSNLAGIGQRWESLRKS 139
Query: 510 IPSQNIRRWMKLVEAQPQVQTAIKALPSDALDKLTKVSSRKSPPTNAE---SGGRQQEGK 680
QN+ RW +++ + T + + + + K KSP N + + +
Sbjct: 140 KKYQNLVRWFNGIDSDYK-DTLNEVIAA----YVGKRGIGKSPAPNLKEKVNDSKDPSAP 194
Query: 681 FIELPHAEMGKVVVRFPP 734
++LP A+ G+V VRF P
Sbjct: 195 EVDLPGAKFGEVCVRFAP 212
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 42.3 bits (95), Expect = 4e-04
Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 5/145 (3%)
Frame = +3
Query: 315 LEKVTMNHWLSFSLIL--EDEIPKSVEYLDKTLGPLTYLVGETLSVSDFAVFSVLY-VSS 485
++ ++ WL ++ ++ E + +LD L T+LV LS++D V+S L
Sbjct: 74 IQAAYVDQWLDYAPVILSGSEFEAACSFLDGYLASRTFLVSYGLSIADIVVWSNLAGTGQ 133
Query: 486 KFKEISKVIPSQNIRRWM-KLVEAQPQVQTAIKA-LPSDALDKLTKVSSRKSPPTNAESG 659
+++ + + QN+ RW + + + + A + + K S ++ P + ++
Sbjct: 134 RWESLRRSKKYQNLVRWFNSIADYSDTLDEVVSAYVGKRGIGKSPAPSLKEKLPDSKQNI 193
Query: 660 GRQQEGKFIELPHAEMGKVVVRFPP 734
+ ++LP A++G+V VRF P
Sbjct: 194 SIPE----VDLPGAKVGEVCVRFAP 214
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 34.3 bits (75), Expect = 0.10
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Frame = +3
Query: 372 IPKSVEYLDKTLGPLT-------YLVGETLSVSDFAVFSVL--YVSSKFKEISKVIPSQN 524
+ +SV L+K LG YL G+ +S++D + FS + ++++++ + P +
Sbjct: 135 VDESVRKLEKVLGVYEARLSGSRYLAGDRISLADLSHFSNMRYFMATEYAGVVDAYP--H 192
Query: 525 IRRWMKLVEAQPQVQTAIKALPSD 596
++ W + + A+P VQ + +P D
Sbjct: 193 VKAWWEALLARPTVQKVMAGMPPD 216
>04_04_1503 +
34031540-34031562,34031682-34032212,34032417-34032571,
34032929-34033020,34033916-34034419
Length = 434
Score = 31.1 bits (67), Expect = 0.95
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +3
Query: 507 VIPSQNIRRWMKLVEAQPQVQTAIKALPSDALDKLTKVSSRKSPPTNAESGGRQQEGKFI 686
V PSQ + + + + ++ + + LDKL + +K NAES R +EG+ +
Sbjct: 213 VAPSQRLASGERCKKGETEMAIGASSASNTTLDKLVNLLRKKDEENNAES-FRLEEGRVM 271
Query: 687 E---LPHAEMGKV 716
+PH ++ +V
Sbjct: 272 HTLCVPHVDLVEV 284
>02_03_0352 + 18050004-18050079,18050321-18050499,18050695-18050724
Length = 94
Score = 31.1 bits (67), Expect = 0.95
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 603 DKLTKVSSRKSPPTNAESGGRQQEGK 680
DKLT SS K P ++ SGGR+QE K
Sbjct: 57 DKLTPNSSVKQQPPSSPSGGRRQEHK 82
>02_04_0366 -
22389591-22390527,22391296-22391429,22391762-22391816,
22392364-22393225,22393342-22393459,22393647-22393737,
22394627-22394670
Length = 746
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 309 SPLEKVTMNHWLSFSLILEDEIPKSVEYLDKTLGPLTYLVGE 434
+P++K WL LIL E+ + V + ++ +TYLVG+
Sbjct: 67 NPVDKSKTGGWLGAGLILGTELAERVCVMGISMNLVTYLVGD 108
>01_06_1683 -
39134826-39135664,39136202-39136278,39136391-39136441,
39136581-39136654,39136782-39136870,39137152-39137234,
39138067-39138241,39138348-39138501
Length = 513
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +3
Query: 327 TMNHWLSFSLILEDEIPKS 383
TMN+WL+FSL +D++P S
Sbjct: 3 TMNNWLAFSLSPQDQLPPS 21
>01_04_0029 - 15240827-15241290,15241925-15241973,15242056-15242205
Length = 220
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +3
Query: 366 DEIPKSVEYLDKTLGPLTYLVGETLSVSDFAVFSVLYVSSKFKEISKVIPSQNIRRWMKL 545
+++ K +E + L TYL G LS D + F + S + +++ W
Sbjct: 141 EKLKKVLEVYEARLSQNTYLAGNFLSFVDLSHFPFTFYFMATPYASLLDKYPHVKAWWDG 200
Query: 546 VEAQPQVQ--TAIKALPSDA 599
+ A+P ++ TA LP A
Sbjct: 201 LAARPSIKKVTAAMVLPLKA 220
>11_02_0063 +
7916048-7917135,7917225-7918690,7920177-7920238,
7921808-7922407
Length = 1071
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 537 MKLVEAQPQVQTAIKALPSDALDKLTKVSSR 629
M ++EA PQ T+I L DA DKL K S +
Sbjct: 877 MLMLEADPQNATSIYNLHKDAKDKLNKSSMK 907
>04_04_0155 -
23153314-23154204,23156887-23157104,23157284-23157392,
23157507-23157509
Length = 406
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 309 SPLEKVTMNHWLSFSLILEDEIPKSVEYLDKTLGPLTYLVGE 434
+P++K WL LIL E+ + V + ++ +TYLVG+
Sbjct: 20 NPVDKDRTGGWLGAGLILGTELAERVCVVGISMNLVTYLVGD 61
>03_02_1025 +
13289146-13289586,13291882-13292087,13292174-13292323,
13292412-13292545,13292843-13292949,13293031-13293137,
13293581-13293686,13294098-13294217,13294318-13294474,
13295163-13295254,13295338-13295582,13295668-13296268,
13296362-13296457,13296541-13296794,13297622-13297715,
13299138-13299188
Length = 986
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +3
Query: 330 MNHWLSFSLILEDEIPKSVEYLDKTLGPLTYLVGETLSVSDF 455
+N WLSF+ I++D Y D T G L+Y TL V DF
Sbjct: 730 INDWLSFNKIIDDHF----RYTDPTSGYLSY----TLYVEDF 763
>01_06_0677 -
31104736-31104897,31105046-31105234,31105313-31105470,
31105558-31105648,31105787-31105961,31106065-31106204,
31106293-31106511,31106589-31106718,31107163-31107229,
31107347-31107441,31107535-31107606,31107681-31107736,
31107995-31108060,31108151-31108264,31108787-31109092
Length = 679
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +3
Query: 549 EAQPQVQTAIKALPSDALDKLTKVSSRKSPPTNAESGGRQQEGKFIELPHAEMGK 713
EAQ A A P+ + + + RK P E+ +EG+ E+ A++G+
Sbjct: 13 EAQENPAAAAAAAPAPPPARRRRAARRKEPEVAVEAAPEAEEGREEEIEVADLGR 67
>01_03_0231 +
14014243-14014390,14015053-14015141,14017859-14017949,
14018088-14018215,14018703-14018784,14019022-14019081,
14019160-14019251,14019342-14019462,14019873-14019928,
14020193-14020272,14020774-14020820,14020940-14020989,
14021304-14021366,14021515-14021595,14021703-14021717,
14021875-14021985,14022072-14022147,14022350-14022492,
14022721-14022794,14023364-14023454,14023589-14023687
Length = 598
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +3
Query: 462 FSVLYVSSKFKEISKVI--PSQNIRRWMKLVEAQPQVQTAIKALPSDALDK 608
+SV+ FK++S+ I Q ++ +++VEA +++ AIK L D+ D+
Sbjct: 319 YSVIPHDFGFKKMSEFIIDTPQKLKAKLEMVEALSEIEIAIKLLEDDSSDQ 369
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,318,298
Number of Sequences: 37544
Number of extensions: 388622
Number of successful extensions: 1026
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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