Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19a10
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 143 3e-35
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 66 4e-12
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 62 8e-11
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 59 8e-10
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 52 1e-07
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 51 2e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 50 3e-07
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 47 2e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 47 3e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 46 4e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 45 1e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 45 1e-05
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 45 1e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 44 2e-05
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 44 2e-05
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 44 2e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 44 3e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 42 7e-05
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 42 9e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 42 1e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 42 1e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 41 2e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 40 4e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 5e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 39 7e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 7e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 39 9e-04
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 38 0.001
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.005
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.006
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 35 0.011
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 34 0.019
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.019
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 34 0.019
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.056
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 32 0.099
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 31 0.13
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 31 0.17
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 31 0.23
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.23
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 30 0.30
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.92
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 29 0.92
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.6
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 28 1.6
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 2.1
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 2.1
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 4.9
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 6.5
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 6.5
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 6.5
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 26 6.5
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 8.6
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 143 bits (346), Expect = 3e-35
Identities = 66/153 (43%), Positives = 99/153 (64%), Gaps = 5/153 (3%)
Frame = +1
Query: 292 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 471
K+F+GGL+WETTD LRD+F +GE+ V D TGRSRGF F+ FK P+ +++VM+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 472 GEHTINNKKVDPKKAKARH-----GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 636
EH ++ K +DPK+A R K+FVGG+ + +++E RNFF++FG +L+ + DK
Sbjct: 224 -EHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDK 282
Query: 637 TKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 735
+ +GF F+T+E+E V + P TI GK
Sbjct: 283 DTGRPRGFGFVTYENESAVEATMSQPYITIHGK 315
Score = 60.9 bits (141), Expect = 2e-10
Identities = 23/59 (38%), Positives = 43/59 (72%)
Frame = +1
Query: 529 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 705
GK+F+GGL+ E +DD +R++F +FG +L+ + D T + +GF F+TF++ + VN+++
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM 221
Score = 59.7 bits (138), Expect = 4e-10
Identities = 25/75 (33%), Positives = 45/75 (60%)
Frame = +1
Query: 292 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 471
K+FVGG+ + T++E R+ F +G + + D +TGR RGF F+ ++ +++ M+
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 472 GEHTINNKKVDPKKA 516
TI+ K V+ K+A
Sbjct: 308 PYITIHGKPVEVKRA 322
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 66.5 bits (155), Expect = 4e-12
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 23/150 (15%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA- 471
+FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ PE+ +AA
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 472 GEHTINNKKV-----DPKK------AKARHGK-----------IFVGGLSSEISDDEIRN 585
G I+ + V +P+ A+ R G +FVG LS ++D++
Sbjct: 325 GTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLST 384
Query: 586 FFSEFGTILEVEMPFDKTKNQRKGFCFITF 675
F G I + +P D + KGF ++TF
Sbjct: 385 AFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 56.4 bits (130), Expect = 4e-09
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 474
+FVG LS+ T+ +L FG G+I+SI + TDP +GR +GF ++ F +S K +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 475 EHTI 486
H I
Sbjct: 428 GHFI 431
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 535 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 687
+FVG LS + D + F E+GTI+ + D + KG+ ++ FE+ +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 62.1 bits (144), Expect = 8e-11
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
Frame = +1
Query: 283 TLKKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 462
T L+VG L T+ L + F + G + SI V D T RS G+A++ F E +K
Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137
Query: 463 MAAGEHTINN--------KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEV 618
+ +T+ + DP K G +F+ L I + + + FS FG IL
Sbjct: 138 LDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 619 EMPFDKTKNQRKGFCFITFESEQVVN 696
++ D+ N KG+ F+ F+S + N
Sbjct: 198 KVAVDELGN-AKGYGFVHFDSVESAN 222
Score = 46.4 bits (105), Expect = 4e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 465
LF+ L E D+ L+ F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 58.8 bits (136), Expect = 8e-10
Identities = 25/63 (39%), Positives = 40/63 (63%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 474
LFVG L +ETTD +L++HFG G+I + + T +TG+ +GF F+ F ++ K M G
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELG 289
Query: 475 EHT 483
++
Sbjct: 290 HNS 292
Score = 33.1 bits (72), Expect = 0.043
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 535 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 675
+FVG L E +D +++ F + G I V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 51.6 bits (118), Expect = 1e-07
Identities = 24/71 (33%), Positives = 39/71 (54%)
Frame = +1
Query: 265 YPSAGLTLKKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 444
+P T + +FVG L++E ++ L +FG G I+ + + DP T +GFA+I FK
Sbjct: 262 HPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDT 321
Query: 445 ESIDKVMAAGE 477
+DK + E
Sbjct: 322 MGVDKALLLNE 332
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 535 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 705
+FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V+ L
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/79 (31%), Positives = 42/79 (53%)
Frame = +1
Query: 475 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 654
E TI K + K + + G ++VG L + ++R +FS+FG +L + M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 655 GFCFITFESEQVVNDLLKT 711
+ FI FES V N + +T
Sbjct: 147 HYAFIEFESLDVANVVAET 165
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 50.0 bits (114), Expect = 3e-07
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +1
Query: 289 KKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 468
+ ++VG + + T +EL+ HF + G + + + D TG +GFA+I F P + +
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL 114
Query: 469 AGEHTINNK--KVDPKK 513
++ + KV PK+
Sbjct: 115 LNGSMLHERPLKVTPKR 131
Score = 36.3 bits (80), Expect = 0.005
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +1
Query: 535 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 705
++VG + ++ +E+++ F+ G++ V + DK KGF +I F +V + L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 47.2 bits (107), Expect = 2e-06
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES--IDKVMA 468
LFVG L +++ + L+ HF G++ S+ + TD +GR +G+AF+ F P++ I K +
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
Query: 469 AGEHTI-NNKKVDPKKAKARHGK 534
HTI +K++ + GK
Sbjct: 154 F-HHTIYKERKINIELTAGGGGK 175
Score = 42.7 bits (96), Expect = 5e-05
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Frame = +1
Query: 475 EHTINNKKVDPKKAKARHGK-------IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 633
+H+++N K+K + GK +FVG L + S + ++ F G + V +P D
Sbjct: 67 KHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTD 126
Query: 634 KTKNQRKGFCFITF 675
KT ++KG+ F+ F
Sbjct: 127 KTSGRQKGYAFVEF 140
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 46.8 bits (106), Expect = 3e-06
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +1
Query: 532 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLK 708
++F+ L+ ++D++++ F FG + +V MP DK N KGF +I F +++ V L+
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 709 TPKRTIGGK 735
+ G+
Sbjct: 384 LDAKPFQGR 392
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 46.4 bits (105), Expect = 4e-06
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +1
Query: 289 KKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 438
K +F+ LS++T + ++ F YG IE I V + TG+S G+AF+VF+
Sbjct: 100 KTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.8 bits (101), Expect = 1e-05
Identities = 17/51 (33%), Positives = 33/51 (64%)
Frame = +1
Query: 535 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 687
I++G L ++++D+I FSEFG +++ + DK + KGF F+ +E ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 450
+++G L ++ + ++ F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Frame = +1
Query: 454 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 624
D+V E T +KK P+ ++ +FV G++S + +DE++ FS+FGT+ V +
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
Query: 625 PFDKTKNQRKGFCFITFES 681
+ +GF F++F +
Sbjct: 133 MREPVTKASRGFGFLSFST 151
Score = 39.5 bits (88), Expect = 5e-04
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 447
LFV G++ + EL+ F +G + + + +P T SRGF F+ F E
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE 153
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.8 bits (101), Expect = 1e-05
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +1
Query: 301 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 480
VG LS++ T+ +L D FG + SI + DP T RSRGF ++ F+ +++ +A
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 481 TINNKKVDPKKAKAR 525
+ + V A+ R
Sbjct: 156 DLMGRPVRITVAEPR 170
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/69 (37%), Positives = 38/69 (55%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 474
LFV L+++T +L + F G I+ V T+P TG +RG+ F+ F E D AA
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAK 64
Query: 475 EHTINNKKV 501
E + NKK+
Sbjct: 65 E--LKNKKL 71
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +1
Query: 256 HGIYPSAGLTLKKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 435
H I + GL +FV L +E T++EL +HF +G + + DP T RS G FI F
Sbjct: 267 HEIRDNEGLE-DTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
Query: 436 K 438
+
Sbjct: 326 R 326
Score = 34.7 bits (76), Expect = 0.014
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 535 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 675
+FV L+ + D++ NFFS+ G I + + + +G+ F+TF
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 31.5 bits (68), Expect = 0.13
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +1
Query: 448 SIDKVMAAGEHTINNKKVDP--KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 621
++D V +G+ + + ++ + + +FV L E ++ E+ N F +FG + +
Sbjct: 248 NVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAK 307
Query: 622 MPFDKTKNQRKGFCFITFESEQVVNDLLK 708
+ D ++ G FI F E+ + L+
Sbjct: 308 LVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 44.0 bits (99), Expect = 2e-05
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 20/151 (13%)
Frame = +1
Query: 289 KKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 468
+ +FV L+ T +EL D F G + + D +GRS+G A++ F +S+ +A
Sbjct: 240 RTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA 299
Query: 469 -AGEHTINNKKV-----DPKKAKARHG--------------KIFVGGLSSEISDDEIRNF 588
+G+ + + K KAR ++ V + ++D++++
Sbjct: 300 LSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAI 359
Query: 589 FSEFGTILEVEMPFDKTKNQRKGFCFITFES 681
F FG I V + D +N+ KGF +I + +
Sbjct: 360 FEPFGDIEFVHLQRD-DQNRSKGFGYIQYRN 389
Score = 39.1 bits (87), Expect = 7e-04
Identities = 18/60 (30%), Positives = 37/60 (61%)
Frame = +1
Query: 271 SAGLTLKKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 450
SA + +L V + + TD++++ F +G+IE ++++ D + RS+GF +I ++ P S
Sbjct: 334 SAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPIS 392
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 535 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-T 711
+FV L++ ++ E+ +FF + G + + ++ DK + KG ++ F E V + +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 712 PKRTIG 729
KR +G
Sbjct: 302 GKRLLG 307
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Frame = +1
Query: 445 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 624
+ ++ + A H + P + +A ++FVG LS+ EIR+ F GT+ +V +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 625 PFDKTKNQRK----GFCFITFESEQVVNDLLKT 711
PF + + + G F+TF +++ V+ ++T
Sbjct: 76 PFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIET 108
Score = 35.1 bits (77), Expect = 0.011
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +1
Query: 292 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR----GFAFIVFKAPESIDK 459
++FVG LS T E+R F G + + + +R G AF+ F E +DK
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 460 VMAAGEHTINNKKVDPKK 513
+ T+N K +D ++
Sbjct: 105 AI----ETLNGKTLDDRE 118
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 435
L V LS +T ++ELRD F +G I+ + + D TGR++GFAF+ +
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 508 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 675
K+ + + V LS + ++E+R+ F FG I V + DK + KGF F+++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 42.3 bits (95), Expect = 7e-05
Identities = 18/75 (24%), Positives = 40/75 (53%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 474
+FVG + ++ +++++ + F G +++ + DP TG +G+ F F E+ A
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET----TAMA 64
Query: 475 EHTINNKKVDPKKAK 519
+NN ++ P+K +
Sbjct: 65 VRKLNNSELGPRKIR 79
Score = 31.9 bits (69), Expect = 0.099
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 535 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT-FESEQVVNDLLKT 711
+FVG + ++S+ ++ F++ G + ++ D KG+ F F+SE + K
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 712 PKRTIGGKE 738
+G ++
Sbjct: 69 NNSELGPRK 77
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 41.9 bits (94), Expect = 9e-05
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +1
Query: 292 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 453
++FV +S T ++LR HF ++GE+ +++K +P TG S G I F SI
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSI 148
Score = 34.3 bits (75), Expect = 0.019
Identities = 11/55 (20%), Positives = 29/55 (52%)
Frame = +1
Query: 532 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 696
++FV +S ++ +++R F FG + ++++ + G C I+F+ ++
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.5 bits (93), Expect = 1e-04
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK----APESIDKV 462
++VG L W T+D+ L D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 41.5 bits (93), Expect = 1e-04
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +1
Query: 448 SIDKVMAAGEHTINNKKVDPKKAKA--RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 621
SI ++ A + I K D + A + ++VG LS ++++I FS+ G I +
Sbjct: 3 SITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRII 62
Query: 622 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT 723
M D+ GFCF+ + Q D LK RT
Sbjct: 63 MGVDRFTKTPCGFCFVEYFENQDALDSLKYISRT 96
Score = 34.3 bits (75), Expect = 0.019
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI-VFKAPESIDKVMAA 471
++VG LS+ TT++++ F GEI I + D T GF F+ F+ +++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 472 GEHTINNKKVDPKKAKA-RHGKIFVGGLSSEISDDEIRNFF 591
+++ + + G+ + G S DE+R F
Sbjct: 94 SRTSLDERIIRADLDHGYEEGRQYGRGASGGQVRDEMREEF 134
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 40.7 bits (91), Expect = 2e-04
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGE-IESINVKTDPNTGRSRGFAFIVFKAPESID-KVMA 468
LFVG L ++ L D F A G+ +++ V D N GRS+G+ F+ + + E+ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEA 159
Query: 469 AGEHTINNKKVDPKKAKARHGK 534
+ NK + A R GK
Sbjct: 160 MNNQFLMNKPITVSYAFKREGK 181
Score = 34.3 bits (75), Expect = 0.019
Identities = 26/137 (18%), Positives = 56/137 (40%), Gaps = 8/137 (5%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV-MAA 471
+++G L + TD L + G + +I++ D GF F F + ++
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 472 GEHTINNKKVDPKKAKARHG-------KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 630
+ + K + +A G +FVG L + + + + FS G +++
Sbjct: 73 NQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVA 132
Query: 631 DKTKNQRKGFCFITFES 681
+ KG+ F++++S
Sbjct: 133 RDENGRSKGYGFVSYDS 149
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.9 bits (89), Expect = 4e-04
Identities = 18/71 (25%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Frame = +1
Query: 526 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDL 702
H ++FVG L ++++D+ + FSE+ ++++ ++ D+ + + +GF F++F +S+Q +
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLKAW 87
Query: 703 LKTPKRTIGGK 735
+ + IG +
Sbjct: 88 REKNGKYIGSR 98
Score = 35.9 bits (79), Expect = 0.006
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 292 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 438
+LFVG L + D+ L F Y + V D G++RGF F+ FK
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.5 bits (88), Expect = 5e-04
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +1
Query: 505 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 627
P+ A + +FVGGLS +S++E++ F FG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 34.7 bits (76), Expect = 0.014
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVF 435
+FVG LS + ++ F + Y +S + TDP T SRG+ F+ F
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 28.7 bits (61), Expect = 0.92
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 405
+FVGGLS +++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 39.1 bits (87), Expect = 7e-04
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 459
LFV L+ T D++L F +G+I S V D TG S +AFI F ES++K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
Score = 32.3 bits (70), Expect = 0.075
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 535 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 693
+FV L+ D+++ FS FG I+ ++ DK + FI F++++ V
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESV 298
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 39.1 bits (87), Expect = 7e-04
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +1
Query: 535 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 636
+FVGGL+S +S+ +++ F FG IL +++PF K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.7 bits (86), Expect = 9e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 438
LF+ LS++ T +E+ D FG YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/79 (20%), Positives = 42/79 (53%)
Frame = +1
Query: 289 KKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 468
++L+V + ++ +K++ F YG++ES+ + N + +GF ++V + + ++
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENALS 814
Query: 469 AGEHTINNKKVDPKKAKAR 525
A + N+ ++ +K R
Sbjct: 815 AAGKQLGNRVLNVVLSKPR 833
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 36.3 bits (80), Expect = 0.005
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 444
++VG + +E ++++ D F G ++S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
Score = 31.1 bits (67), Expect = 0.17
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +1
Query: 535 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 675
++VG + E++++++ + F + G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 35.9 bits (79), Expect = 0.006
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 535 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKT 711
I V L+ ++ + I F +G I + MP K KG+C+I + +Q N + K
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 712 PKRTIGGKE 738
+ G+E
Sbjct: 161 NNAELDGEE 169
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.1 bits (77), Expect = 0.011
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 532 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK-NQRKGFCFITFESEQ 687
+I+VGGLSS I ++ + FS FG++ +E+ T + F ++ F +++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDE 58
Score = 33.9 bits (74), Expect = 0.024
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 289 KKLFVGGLSWETTDKELRDHFGAYGEIESINV--KTDPNTGRSRGFAFIVFKAPE 447
K+++VGGLS +L F +G + ++ + K+ P G + FA++ F+ E
Sbjct: 5 KRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 34.3 bits (75), Expect = 0.019
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Frame = +1
Query: 484 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI-------------LEVE 621
+NN K+ P + + I+VG + S +SD+EI FS++G + E
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKA 60
Query: 622 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKE 738
PF KN + + F+ F + + + ++LK K T+G ++
Sbjct: 61 KPFKPPKNGVQ-YGFVKFVNAESIEEVLKDAKGMTLGQRK 99
Score = 34.3 bits (75), Expect = 0.019
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1
Query: 322 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 501
T +L D F +G I S + PN+G S+G+ F+ F+ E+ + T+N V
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA----AVRAKDTLNGMMV 450
Query: 502 DPKK 513
K+
Sbjct: 451 GKKR 454
Score = 31.9 bits (69), Expect = 0.099
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Frame = +1
Query: 295 LFVGGLSWETTDKELRDHFGAYGEIESI----------NVKTDPNTGRSRG--FAFIVFK 438
++VG + +D+E+ HF YG++ESI K P G + F+ F
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFV 78
Query: 439 APESIDKVMA-AGEHTINNKKVDPKKAKARHGKI 537
ESI++V+ A T+ +K+ K K+
Sbjct: 79 NAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKL 112
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.3 bits (75), Expect = 0.019
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 532 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 681
KI++ L + +D++ FG +L ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 292 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 471
K+++ L + ++ + +G++ S + + G S+GF F FK P + ++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 472 --GEHTINNK 495
G+ T NK
Sbjct: 371 LDGKDTYGNK 380
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 34.3 bits (75), Expect = 0.019
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +1
Query: 487 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 666
+NKK + ++ +R +++ GL SD+ + + + FG + + D N KG+ F
Sbjct: 283 DNKKSN-MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 667 ITFESEQ 687
FE E+
Sbjct: 342 ACFEEEK 348
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 32.7 bits (71), Expect = 0.056
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 508 KKAKARHGKIF-VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 675
+ AK+ G I V G+ E +++++ + F++FG + + + D+ KG+ I +
Sbjct: 2 RPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY 58
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.9 bits (69), Expect = 0.099
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 331 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVDP 507
++L + F +G I+S + + P+T S+G+ F+ F P E++ + K++
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 508 KKAKARHGK 534
A+ R +
Sbjct: 495 NYAEKREDR 503
Score = 27.9 bits (59), Expect = 1.6
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +1
Query: 463 MAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK 642
M A E K KK + I+VG L S ++ F FG + M + K
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKK 56
Query: 643 NQRKG------FCFITFESE 684
N+ F FITFE++
Sbjct: 57 NKSTDSKSPTLFAFITFENK 76
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +1
Query: 535 IFVGGLSSEI--SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT----FESEQVVN 696
+FV L I + ++ FS+FG I + + KG+ F++ FE+ Q +N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 697 DL 702
L
Sbjct: 481 TL 482
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 292 KLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVFKAP 444
K+ V L + T+ ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 56 KIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 31.1 bits (67), Expect = 0.17
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 289 KKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 399
+ +F+G L +KE+ + FG +G+IE I + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 535 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 624
+F+G L S + EI F +FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 30.7 bits (66), Expect = 0.23
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Frame = +1
Query: 268 PSAGLTLKKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 447
P + LF+ G+ E D ++R HF YG ++S+ + R++ AF+ FK
Sbjct: 205 PPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVC-----SHRAK-CAFVNFKTRS 258
Query: 448 SIDKVMAAGEHTINNKKVDPKKAKARHGK-IFVGGLSSEISDDEI 579
S + +AA N ++ + K + GK +GG E+ + ++
Sbjct: 259 SAE--IAAAASPDGNVVIEGFRLKVQWGKPRSLGGPEGEVRNAKL 301
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 30.7 bits (66), Expect = 0.23
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 565 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 717
+++ IR+FFS+FG + +VE+ N C + F S + N+ +P+
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPE 299
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 30.3 bits (65), Expect = 0.30
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 553 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 681
+ +++D +R+ +S FGT+ V + D +K ++ + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.92
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 499 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 660
+ P K +F+GG++ + + +R+ F FG++ + + N R GF
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL----NHNYRHGF 445
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 28.7 bits (61), Expect = 0.92
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +1
Query: 340 RDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 519
R++ GE+E V +P + ++F K+ A +++ +++DP K
Sbjct: 344 RENLLEVGEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFERIDPAKVS 403
Query: 520 ARHGKIFVGGLS 555
A + GG++
Sbjct: 404 ALQQMLIAGGVN 415
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 535 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 624
+F+G L + I++DEIR FG I ++++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKI 237
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 274 AGLTLKKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 399
AG + +++G T + L++ F +GEIE +N + N
Sbjct: 409 AGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 289 KKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 399
+ +F+G L T+ E+R+ +G I+ I + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 505 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 645
P++ + +GK L+S ++E+RN FSEF LE E+ F+ ++
Sbjct: 946 PEEIRKLNGKKI---LNSFFDNEELRNEFSEFIQHLESEVSFNSLRS 989
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 412 RGFAFIVFKAPESIDKVMAAGEHTINNKK 498
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 541 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 720
V L ++ + ++ + F F I V M +D+ + +G C + FE+ Q D KT +
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPI-RVIMNYDRA-GRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 721 T 723
T
Sbjct: 147 T 147
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +1
Query: 535 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 714
++V L I+ E+R++F FG IL ++ N + + +EQ +N++ P
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV----NNNSGRIVFAQRYFAEQAINEMNNFP 233
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 519 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 358
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +1
Query: 532 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 705
++FVG + + + +++ +FF +G IL+ ++ GF F+ E + D++
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKL--------MNGFGFVEVEDARDARDIV 54
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 292 KLFVGGLSWETTDKELRDHFGAYGEI 369
+LFVG + + T +++ D F YG+I
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQI 30
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 424 RQTLVICLCLDLSLH*YSLFHRMLQNDHGAPYLWSPSSAHQQKVFLV 284
R+ LV+ C+ + L + L N YLW + HQ ++FL+
Sbjct: 2194 RRKLVVWFCISVFLQNFWLSSL---NGRSWSYLWDIGNIHQWQIFLL 2237
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 268 PSAGLTLKKLFVGGLSWETTDKELRDHFGAYGEIESINVKTD 393
P AG +K F G LS + KE+ D A E++ I +K D
Sbjct: 91 PEAGHNWEKSFFG-LSSQPFSKEICDLLTAPLEVDDIEIKPD 131
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -3
Query: 555 AESSDKNLPMSCFSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYIN 376
++ L M C +++ F +F S ++V +GLK++ SA V I + N
Sbjct: 1191 SDEETTQLAMDCLAVMAKRFSASPELFISPIEVVSGPYGLKNSARDVQVSAIVCITVLTN 1250
Query: 375 TL 370
TL
Sbjct: 1251 TL 1252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,964
Number of Sequences: 5004
Number of extensions: 58491
Number of successful extensions: 247
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -