Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19a08
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   5.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.5  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   7.3  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          22   7.3  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   7.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.6  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 136 TGKLYAVGSATPPSERRLSVPATTIQ 213
           +G+L+  GSA  P E+    P T  Q
Sbjct: 26  SGELFKAGSAEQPKEQEPLPPVTPPQ 51


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 145 LYAVGSATPPSERRLSVPATTIQ 213
           L+   S+TP   + L  P TTIQ
Sbjct: 273 LFRTASSTPEDLQDLEEPLTTIQ 295


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 295 TKRPRFQNRRAWRRTFS*EIEIRSGEGLQFGKS 393
           TKRP+   R + +   + E + R   GLQF K+
Sbjct: 92  TKRPKDWERLSAKYDSTGEYKKRYEHGLQFAKN 124


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 450 WQYAVSSALPRRWTSSRC 503
           W +   S LP + TSSRC
Sbjct: 68  WIHVDISFLPEKSTSSRC 85


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 295 TKRPRFQNRRAWRRTFS*EIEIRSGEGLQFGKS 393
           TKRP+   R + +   + E + R   GLQF K+
Sbjct: 92  TKRPKDWERLSAKYDSTGEYKKRYEHGLQFAKN 124


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +1

Query: 478 RGDGRHLDVV 507
           +GDGRH++V+
Sbjct: 205 KGDGRHMEVI 214


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 5    HSPSRVFTASTTSVKFTSPHPH 70
            HSP    TA+TT+       PH
Sbjct: 1368 HSPQITLTATTTNSLTMKVRPH 1389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,455
Number of Sequences: 438
Number of extensions: 4640
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)