Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19a03
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.83 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.83 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   4.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 734 HWNCSFQKTQCLPTHFGRRQGHPSQYYRSHGHHPG 630
           +W C+ +KT    T  G+ +GH     R  G + G
Sbjct: 65  YWQCNDKKTDIEETGRGKGRGHGKGGSRGRGGNRG 99


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 701 LPTHFGRRQGHPSQYYRSHGHHP 633
           LP  +   Q HPSQY+   G  P
Sbjct: 312 LPPSYHPHQHHPSQYHPHRGSSP 334


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 438 WIIAPCWIFGPKWMACVTRTMLTSL 364
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 438 WIIAPCWIFGPKWMACVTRTMLTSL 364
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 438 WIIAPCWIFGPKWMACVTRTMLTSL 364
           W+I PC  F   W  C+   ++ +L
Sbjct: 79  WVIHPCSSFRFYWDLCMLLLLVANL 103


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 385 SNTCHPLRPKYPAGCYYPTRCRNTPGYF 468
           S++C        +  Y  T CR  PGYF
Sbjct: 276 SHSCEACPAHSKSSDYGFTECRCDPGYF 303


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 221 LKGSGSW*EQYQRTVGTIDSR 159
           +K SG W  +Y R +   D R
Sbjct: 288 VKNSGQWLREYDRELEDFDGR 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,236
Number of Sequences: 438
Number of extensions: 6644
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)