Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt19a01
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0701 - 35620559-35620777,35620872-35620949,35621038-356211... 199 2e-51
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 32 0.57
07_01_0459 - 3478756-3478923,3479027-3479092,3479200-3479280,347... 29 3.0
12_01_0143 + 1096622-1096882,1096951-1097264,1097361-1097382 29 5.3
12_01_0090 + 717524-719080 28 7.0
10_01_0042 + 562246-563550 28 7.0
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 28 7.0
08_02_0696 + 20137167-20137485,20137601-20137740,20137841-20137951 28 7.0
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127... 28 9.3
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 28 9.3
>03_06_0701 -
35620559-35620777,35620872-35620949,35621038-35621191,
35621279-35621391,35621487-35621586,35622193-35622389,
35622470-35622526,35622630-35622734,35622824-35622931,
35623651-35623848,35624022-35624024
Length = 443
Score = 199 bits (485), Expect = 2e-51
Identities = 93/175 (53%), Positives = 130/175 (74%)
Frame = +1
Query: 232 IQEAIDQLLALEKQTRTGADMVSTSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQ 411
+ AI+ LL +EKQ R D+ T + + +V++ ++A W LND IVVLSKRR QLKQ
Sbjct: 8 LDAAIESLLNVEKQMRLAGDVAGTRKAAIDIVELCYKAGAWKTLNDQIVVLSKRRGQLKQ 67
Query: 412 AVVKMVQECYTYVDKTPDKETKIKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNV 591
A+ MVQ+ Y+D TPD +T+I+LI+TL +++ GKIYVE+ERARL LAKI+EE+G +
Sbjct: 68 AITAMVQKAMEYIDLTPDMDTRIELIKTLSSVSAGKIYVEIERARLIKRLAKIKEEQGQI 127
Query: 592 AEAAKIIQELQVETYGSMDKREKVELILEQMRLCLAIKDYVRTQIISKKINTKIF 756
EAA ++QE+ VET+GSM K EK+ ILEQ+RLCL +DYVR QI+S+KI+ ++F
Sbjct: 128 DEAADLMQEVAVETFGSMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVF 182
>12_02_0792 -
23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 31.9 bits (69), Expect = 0.57
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Frame = +1
Query: 121 DIGGLDASGKIIKMEVDYSATCDEKLPLW-----KSWAAQGKIQEAIDQLL-ALEKQTRT 282
D+ + + + K+EVD S + W K + Q K A ++ A EK+TR
Sbjct: 495 DMDEEEKTAPVEKVEVDLSLSAHANARRWYELKKKQESKQEKTVTAHEKAFKAAEKKTRL 554
Query: 283 GADMVSTSRILVTVVQIY-FEAKNWSALNDHIVVLSKRRSQLKQAVVK 423
T + + +++ FE NW +++ +++S R +Q + +VK
Sbjct: 555 QLAQEKTVAAITHMRKVHWFEKFNWFISSENYLIISGRDAQQNELIVK 602
>07_01_0459 -
3478756-3478923,3479027-3479092,3479200-3479280,
3479402-3479479,3479625-3479711,3480127-3480223,
3480266-3480339,3480687-3480775,3480878-3480926,
3481090-3481146,3481256-3481357,3482365-3482382
Length = 321
Score = 29.5 bits (63), Expect = 3.0
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Frame = +1
Query: 265 EKQTRTGADMVSTSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYT 444
E+ T M S S ++ + K ++D V+ R + + V + V +T
Sbjct: 126 EQTTGVHKAMNSCSSTMLAKFYRAVKKKLKERMDDFQVLREAIRQEYRDVVERRV---FT 182
Query: 445 YVDKTPDKETKIKLIETLRTITEGKIYVEVE-RARLTHILAKIREEEGNVAEAAKIIQEL 621
PD+ET LIET R+ + ++ + R ++ +A+I+E V + + + EL
Sbjct: 183 VTGSRPDEETVDNLIETGRSEQIFQEAIQQQGRGQILDTVAEIQERHDAVRDLERKLLEL 242
Query: 622 Q 624
Q
Sbjct: 243 Q 243
>12_01_0143 + 1096622-1096882,1096951-1097264,1097361-1097382
Length = 198
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Frame = +1
Query: 199 PLWKSWAAQGKIQE-----AIDQLLALEK 270
P+WK + QGK QE A++QLL LEK
Sbjct: 91 PIWKWFTTQGKEQEDAYEAAMEQLLVLEK 119
>12_01_0090 + 717524-719080
Length = 518
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 202 LWKSWAAQGKIQEAIDQLLALEKQTRTGADMVSTSRI-LVTVVQIYFEAKNWSALNDHIV 378
LWK A ++ ID + R +++ T LVT+ +Y EAK W + +H+
Sbjct: 443 LWKMLLAACRVHGHIDLAYMFFHELR---ELILTDNGGLVTISNVYAEAKRWDDV-EHLR 498
Query: 379 VLSKRRSQLKQA 414
+ + S LK A
Sbjct: 499 MKVRCNSALKHA 510
>10_01_0042 + 562246-563550
Length = 434
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 355 SALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKL 486
S+L +HI+V ++RR+ + +AV ++ +C T V T + + L
Sbjct: 234 SSLINHIIVGARRRATVFEAVAAVLWQCRTRVVMTDPEAPAVLL 277
>09_01_0102 +
1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 550 THILAKIREEEGNVAEAAKIIQELQVETYGSMDKREKVELILEQMR 687
T + KI E E +A+ +II + + DKRE +EL ++ ++
Sbjct: 652 TSLGEKIAEMESEIADMERIISQRTRDMKKPNDKREDIELKIKNLK 697
>08_02_0696 + 20137167-20137485,20137601-20137740,20137841-20137951
Length = 189
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 466 KETKIKLIETLRTITEGKIYVEVERARLTHILAKIREEE 582
K TKIKL++ T+ GK+Y V +T L R+E+
Sbjct: 81 KITKIKLLKPKETLLLGKVYRLVTSQEVTKALQARRQEK 119
>07_01_0181 +
1274177-1274200,1274335-1276161,1276519-1277448,
1278314-1278367
Length = 944
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +1
Query: 646 DKR-EKVELILEQMRLCLAIKDYVRTQIISKKINTKI 753
DKR E++++ ++QMR + I D+V Q +K+N ++
Sbjct: 68 DKRNEELKITVDQMRNAMKINDWVNLQESFEKLNKQL 104
>02_01_0177 +
1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +1
Query: 646 DKR-EKVELILEQMRLCLAIKDYVRTQIISKKINTKI 753
DKR E++++ ++QMR + I D+V Q +K+N ++
Sbjct: 384 DKRNEELKITVDQMRNAMKINDWVNLQESFEKLNKQL 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,825,016
Number of Sequences: 37544
Number of extensions: 345489
Number of successful extensions: 815
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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