Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt19a01
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40029-6|AAA81126.1|  490|Caenorhabditis elegans Proteasome regu...   199   2e-51
AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine re...    30   1.6  
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z48241-1|CAA88285.1|  346|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnorm...    28   8.3  
U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnorm...    28   8.3  
U23172-2|AAM22069.2|  538|Caenorhabditis elegans Ubiquitin prote...    28   8.3  
AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor ...    28   8.3  

>U40029-6|AAA81126.1|  490|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 5 protein.
          Length = 490

 Score =  199 bits (486), Expect = 2e-51
 Identities = 104/204 (50%), Positives = 137/204 (67%)
 Frame = +1

Query: 145 GKIIKMEVDYSATCDEKLPLWKSWAAQGKIQEAIDQLLALEKQTRTGADMVSTSRILVTV 324
           G++ KME DYS   DE L L     AQ     A++ L  +EK TR GADM S +R++  +
Sbjct: 34  GRLFKMEQDYSKQVDEAL-LKARDIAQKDAVAAVESLNNIEKLTRLGADMKSNTRVVQYM 92

Query: 325 VQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRT 504
            ++ FE + W  L + I+ LSK+R  +K A+ KMV++    +DK P ++ K+KLIETLRT
Sbjct: 93  TKLCFEGQKWDLLMETIMTLSKKRLLIKMAIAKMVRDAVAMIDKMPTEDLKMKLIETLRT 152

Query: 505 ITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDKREKVELILEQM 684
           +T GKIYVEVERARLT ++ K  E EG + EAA ++ ELQVETYGSM+ REKV+ +LEQM
Sbjct: 153 VTAGKIYVEVERARLTSMVVKKLEREGKLDEAATMLLELQVETYGSMEMREKVQYLLEQM 212

Query: 685 RLCLAIKDYVRTQIISKKINTKIF 756
           R  L   D+VR  IISKKIN K F
Sbjct: 213 RYSLVRNDFVRATIISKKINIKFF 236


>AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine
           receptor, class t protein62 protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -2

Query: 195 FLITCCTIVHFHFYYFSTSIETADISVCSHFEKLKQNNLLNSVNVTIHKIIACVINSTNL 16
           F+  C + VH    YF  +  + +  +CS + K K     N   + I+ I ACV+   N 
Sbjct: 263 FMWICNSAVH-PIIYFIVNNNSTNSKICSKYSKFKMFEFFNYSTIPIN-INACVLARFNF 320

Query: 15  S 13
           S
Sbjct: 321 S 321


>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
           protein W02B8.2 protein.
          Length = 1256

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/66 (24%), Positives = 37/66 (56%)
 Frame = +1

Query: 490 ETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDKREKVEL 669
           +TL+   EG     +E+     ++A+IR  E ++    K+ QEL++    ++ + +K+E 
Sbjct: 444 KTLKETAEGSRRRAIEQCN--EMVARIRGLEASLENQRKVEQELEMVKAENVRQAKKIEF 501

Query: 670 ILEQMR 687
           + E+++
Sbjct: 502 MKEEIQ 507


>Z48241-1|CAA88285.1|  346|Caenorhabditis elegans Hypothetical
           protein C32A3.2 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 39/169 (23%), Positives = 81/169 (47%), Gaps = 5/169 (2%)
 Frame = +1

Query: 244 IDQLLALEKQTRTGADMVSTSRIL--VTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAV 417
           I++L+A EK +   A   ++S +L    ++ +  +    + +   +   S +  Q K+ +
Sbjct: 117 INRLVANEKASFDAAAASASSEMLDDQALIGLLADVAGDAKVEKKLPPKSAQLRQEKRGL 176

Query: 418 VKMVQECYTYVDKT--PDKETKIKLIETLRTITEGKIYVEVER-ARLTHILAKIREEEGN 588
           V + +E +    ++    +E ++K  ET+  + E +I ++ +R A L  +  K+ +EE  
Sbjct: 177 VLLRKEIFYQAVQSGFTTEEARVKS-ETI--VNEAQIKLQEQRKALLNDVREKVEQEEVE 233

Query: 589 VAEAAKIIQELQVETYGSMDKREKVELILEQMRLCLAIKDYVRTQIISK 735
             E ++  Q+L       M+K  K +LI   ++   A  D    QI+SK
Sbjct: 234 ETERSEKDQKLFTMALEFMEKIYKDDLISSAVQFPTAHSD---QQILSK 279


>U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnormal
           morphology protein1, isoform a protein.
          Length = 1117

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 2/137 (1%)
 Frame = +1

Query: 298 STSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETK 477
           +  R  VT         NW   +  I V + RR  ++  ++   ++C  Y++    KET 
Sbjct: 75  ANQRAYVTCNYDMINPSNW-LFSHFIEVKTARRIYIE--LLFNTRDCDAYLNPKSCKETF 131

Query: 478 IKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYG-SMDKR 654
              ++  +T   G   +E ER       ++  +   N+   A+    +  ET G  +D  
Sbjct: 132 SVYLKQFKTSRPGSTKIEKER------FSEDIDNWKNIGRLARSNSNMTTETLGMEIDSD 185

Query: 655 EK-VELILEQMRLCLAI 702
            K + +  E+  +CL++
Sbjct: 186 TKTIRIAFEEQGICLSL 202


>U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnormal
           morphology protein1, isoform b protein.
          Length = 1122

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 2/137 (1%)
 Frame = +1

Query: 298 STSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETK 477
           +  R  VT         NW   +  I V + RR  ++  ++   ++C  Y++    KET 
Sbjct: 75  ANQRAYVTCNYDMINPSNW-LFSHFIEVKTARRIYIE--LLFNTRDCDAYLNPKSCKETF 131

Query: 478 IKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYG-SMDKR 654
              ++  +T   G   +E ER       ++  +   N+   A+    +  ET G  +D  
Sbjct: 132 SVYLKQFKTSRPGSTKIEKER------FSEDIDNWKNIGRLARSNSNMTTETLGMEIDSD 185

Query: 655 EK-VELILEQMRLCLAI 702
            K + +  E+  +CL++
Sbjct: 186 TKTIRIAFEEQGICLSL 202


>U23172-2|AAM22069.2|  538|Caenorhabditis elegans Ubiquitin protein
           1, isoform c protein.
          Length = 538

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
 Frame = +1

Query: 421 KMVQECYTYVDKTPDKETKIKLIETLR--------TITEGKIYVEVERA-RLTHILAKIR 573
           K +++  T  D    KE+ + L+  LR        T+T   I +EVE +  + ++ AKI+
Sbjct: 428 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQ 487

Query: 574 EEEGNVAEAAKIIQELQVETYGSMDKREKVEL 669
           ++EG   +  ++I      ++G+  +R   +L
Sbjct: 488 DKEGIPPDQQRLIFAGVYSSFGAPSQRRYADL 519


>AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor
           tyrosine kinase protein.
          Length = 1122

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 2/137 (1%)
 Frame = +1

Query: 298 STSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETK 477
           +  R  VT         NW   +  I V + RR  ++  ++   ++C  Y++    KET 
Sbjct: 75  ANQRAYVTCNYDMINPSNW-LFSHFIEVKTARRIYIE--LLFNTRDCDAYLNPKSCKETF 131

Query: 478 IKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYG-SMDKR 654
              ++  +T   G   +E ER       ++  +   N+   A+    +  ET G  +D  
Sbjct: 132 SVYLKQFKTSRPGSTKIEKER------FSEDIDNWKNIGRLARSNSNMTTETLGMEIDSD 185

Query: 655 EK-VELILEQMRLCLAI 702
            K + +  E+  +CL++
Sbjct: 186 TKTIRIAFEEQGICLSL 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,486,308
Number of Sequences: 27780
Number of extensions: 342601
Number of successful extensions: 1034
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)