Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18p23
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 46 4e-06
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 40 3e-04
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 37 0.002
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 37 0.002
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 36 0.003
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 35 0.009
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 32 0.048
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 27 1.8
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 26 3.2
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 4.2
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 26 4.2
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 25 5.6
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 25 7.3
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|... 25 7.3
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom... 25 7.3
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 9.7
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 25 9.7
SPAC959.10 |sen15||tRNA-splicing endonuclease subunit Sen15|Schi... 25 9.7
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 46.0 bits (104), Expect = 4e-06
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Frame = +1
Query: 190 IMTEYRMLQTENLRGIYVIPSYESSFLWYGVIFVRSGL-YEGGVFRFTITLPEKFPDDET 366
+M +++ +Q + G+ P ++ LW VI + +E G F+ ++ E++P+ +
Sbjct: 9 LMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPN-KP 67
Query: 367 PVLTFVSNLYHPAIDASTGLLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPA 537
P++ FVS ++HP + A+ G L L + W D V IL + + ++ + PA
Sbjct: 68 PLVKFVSTMFHPNVYAN-GELCLDILQNRWSPTYD-VAAILTSIQSLLNDPNNASPA 122
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 39.5 bits (88), Expect = 3e-04
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +1
Query: 304 YEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAI-DASTGLLSLREVFPMWDKKRDHVW 480
+EGG+++ T+ PE++P P F L+HP + + T LS+ W K +
Sbjct: 53 WEGGLYKLTMAFPEEYP-TRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGW-KPAITIK 110
Query: 481 QILKYLHIIFDNLSIKVPAQ 540
QIL + + D+ +I PAQ
Sbjct: 111 QILLGIQDLLDDPNIASPAQ 130
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 298 GLYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAID 411
G Y+GG F+F I + + +P D P + ++ +YHP ID
Sbjct: 63 GYYKGGKFKFRIQIDDNYPHD-PPKVKCLNKIYHPNID 99
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 37.1 bits (82), Expect = 0.002
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Frame = +1
Query: 199 EYRMLQTENLRGIYVIPSYESSFLWYGVIFVRS-GLYEGGVFRFTITLPEKFPDDETPVL 375
EY L+ + I V ++ F W S +Y GG F F++ P +P + P +
Sbjct: 15 EYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYP-FQPPTI 73
Query: 376 TFVSNLYHPAIDASTGL---LSLREVFPMWDKKRDHVWQILKYL 498
F + +YHP D+ + + ++VF K R + QIL+ L
Sbjct: 74 EFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLL 117
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 36.3 bits (80), Expect = 0.003
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +1
Query: 190 IMTEYRMLQTENLRGIYVIPSYESSFLWYGVIFV--RSGLYEGGVFRFTITLPEKFPDDE 363
I+ E L + GI P+ E + ++ + + YEGG F + LP+++P
Sbjct: 7 IIKEIETLTRDPPPGIVAAPT-EDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYP-MM 64
Query: 364 TPVLTFVSNLYHPAID 411
P + F++ +YHP +D
Sbjct: 65 PPNVRFLTKIYHPNVD 80
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 34.7 bits (76), Expect = 0.009
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 247 PSYESSFLWYGVIF-VRSGLYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTG 423
P + F W I Y GGVF +I P +P + P + F + +YHP I+ S G
Sbjct: 25 PVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYP-FKPPKVNFTTRIYHPNIN-SNG 82
Query: 424 LLSLREVFPMW 456
+ L + W
Sbjct: 83 SICLDILRDQW 93
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 32.3 bits (70), Expect = 0.048
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +1
Query: 301 LYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTGLLSLREVFPMWDKKRDH 474
++E ++ I +PD P++TFVS + P +D TG ++ ++ + KR++
Sbjct: 52 VHENRIYSLKIHCDANYPD-APPIVTFVSRINLPGVDGETGKVNPHKIDCLRHWKREY 108
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 130 ESASNKETRELYSMLHQEYTIMTEYRMLQTENLRGIYVIPSYE 258
E S+ R+ +L+ +Y ++EY + EN + V+PSYE
Sbjct: 111 EELSSLLQRDDIQLLNLDYVDLSEYFVSCPENAIYLVVLPSYE 153
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +1
Query: 295 SGLYEGGVFRFTITLPEKFPDDETPVLTFVSNL--YHPAIDASTGLLSLREVFPMWD 459
SG G+ + TI L + F T L + + HPAI + +EV WD
Sbjct: 40 SGALASGILKLTI-LHQPFIKVHTLKLQLIKRITVLHPAISHCSACAGSKEVLQTWD 95
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 82 FIRY*HRKF*TQIMTEESASNKETRELYSMLHQEYTIMTEYRMLQTENLRGIYVIPSYES 261
+I+ HR +++ E+ N E R+ + E I T R+L ++ ++P YES
Sbjct: 464 YIKVRHRLKALLVLSIENTENPEKRKYF-----EINIETPVRILSCRCVKDSTLLPPYES 518
Query: 262 S 264
S
Sbjct: 519 S 519
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 283 IFVRSGLYEGGVFRFTITLPEKFPDDET-PVLT 378
+F R G GGV+ +T TL K P T P+LT
Sbjct: 36 LFERRGS-PGGVWNYTSTLSNKLPVPSTNPILT 67
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Frame = -2
Query: 521 LKLSNIICKYLS-----ICQTWSRFLSH 453
LKL+N ICK++ + WS FL H
Sbjct: 373 LKLNNDICKFIMKLSVWVIDVWSNFLLH 400
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -1
Query: 159 FSGFFITSTLFSHYLCLKFPMLISNKLSKLRRSWWAQYYYYE*KIREL 16
++G + +S K+ ++ NK + R S +AQYY Y + +++
Sbjct: 112 YNGIQLDYDSYSISFDAKYVLVSVNKSQRWRHSSFAQYYLYNTETKDV 159
>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 347
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +3
Query: 417 HWPFKSERSVSNVGQKA*PCLANTQIFTYNI 509
HW K+ S N G+++ P +F + I
Sbjct: 30 HWQLKNLISTQNTGEESNPIYYTNSVFVWKI 60
>SPAC1F5.08c |yam8|ehs1|calcium transport
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = -1
Query: 549 ASVLGRYLDA*IIKYYM*IFEYLPDMVTLFVPHWKHFSQT*KASACVNS 403
AS L + D YY F Y D++ W +S S C NS
Sbjct: 313 ASALAEWYDQQAYGYYQ-NFTYTLDLIPCNATSWSAYSLLKNCSDCANS 360
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 349 FPDDETPVLTFVSNLYHPAIDASTGLL 429
F DETP +V N YH + + T +
Sbjct: 40 FAHDETPSFKWVLNAYHERLRSCTSCI 66
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 303 LRRRCI*IYNYIA*KISRR*NTCFDFCVKLISS 401
L R+ + Y+A KI R N C D ++L+++
Sbjct: 369 LVRKSVKCIGYLAIKIEERKNDCIDSLIELMNT 401
>SPAC959.10 |sen15||tRNA-splicing endonuclease subunit
Sen15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 143
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 491 LSICQTWSRFLSHIGNTSLRLKRPVLASI 405
L + Q W H+ + L+ KRP+L+ I
Sbjct: 31 LRLGQRWCELKVHVLDIDLKTKRPLLSGI 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,030
Number of Sequences: 5004
Number of extensions: 46493
Number of successful extensions: 137
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -