Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18p23
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   3.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.2  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = +1

Query: 211 LQTENLRGIYVIPSYESS 264
           LQT+ ++G+Y++ + +SS
Sbjct: 12  LQTQRIQGLYLLDNNDSS 29


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = -2

Query: 539 WAGTLMLKLSNIICKYLSICQTWSRFLS 456
           WA T+  K  +++C+ ++  + +  +LS
Sbjct: 98  WAITVSWKAGDVMCRIMAFFRMFGLYLS 125


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 313 LLRRDQIEQKSRRTKE 266
           LLRR QI +  RRT +
Sbjct: 170 LLRRAQIRRNERRTPD 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,720
Number of Sequences: 438
Number of extensions: 3593
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)