Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18p18
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    34   0.010
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    30   0.16 
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    27   1.9  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    25   5.9  

>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 34.3 bits (75), Expect = 0.010
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +1

Query: 346 TPYDTVRGDLRDYQVPNNCEAVSVWTLNRHGNRNPGKSVTVS 471
           +PY     D  D   P  CE   V  L RHG+RNP   VT +
Sbjct: 40  SPYHEPYFDGLDSAFPETCEIQQVHLLQRHGSRNPTGDVTAT 81


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 30.3 bits (65), Expect = 0.16
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 337 SSKTPYDTVRGDLRDYQVPNNCEAVSVWTLNRHGNRNP 450
           +S++PY            P  C+   V TL RHG+RNP
Sbjct: 37  TSRSPYHKPYFYGPSIDFPTTCKIKQVHTLQRHGSRNP 74


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 391 PNNCEAVSVWTLNRHGNRNP 450
           P +C    V  L RHG+RNP
Sbjct: 55  PESCAIKQVHLLQRHGSRNP 74


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 325 TDIQSSNSTLDSRWQHSTT 269
           +D Q  +S + +RWQHS+T
Sbjct: 303 SDEQEVSSMMGNRWQHSST 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,583,948
Number of Sequences: 5004
Number of extensions: 25187
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)