Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18p12
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    33   0.028
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   1.9  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.5  
SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce...    26   4.3  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   7.5  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    25   7.5  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   7.5  

>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 33.1 bits (72), Expect = 0.028
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
 Frame = +1

Query: 154 VHVLDLSRI-VAGPFCTMTLGDLGANVIKVESLSGDEARKWGPPFMKDCGDSYYFQSVNR 330
           ++ LD S + +  P   M   D+    +    +S   AR +   F    G SY F ++NR
Sbjct: 367 LYCLDKSFLFIPKPTLLMNTSDITRVTLSRVGMSVSAARTFDLTFTLRSGTSYQFSNINR 426

Query: 331 NKKSICIDFKSQEGKKIIYDLAKKCDVLVENFIPGKLDQMD 453
            ++S  + F   +  KI  DLA   D   +  +   LD  D
Sbjct: 427 VEQSALVAFLESKQIKIHNDLA---DETQQTLLTSALDDED 464


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 536  VYGPLGPKPVIAQYISLGLTVLSFSYPTSIW-SSFPGMKFSTSTSHFFARSYI 381
            V   LG   V  QYISL   +    YP+ I+ +S PG+  S+      AR Y+
Sbjct: 1738 VSAELGYSHVCLQYISLMQCLKQACYPSEIYRASLPGLNASSEKE---ARDYL 1787


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +1

Query: 241 ESLSGDEARKWGPPFMKDCGDSYYFQSVNRNKKSICIDFKSQEGKKIIYDLAKKCDVLVE 420
           +S+  +  RK G   + D G + + QS NR  K +  D K  + ++I   +   C+V +E
Sbjct: 6   KSIRRESLRKLG--CLPDHGWNLFVQSSNRYSKLLEADSKLFKAQRIEDTVLSICEVTLE 63

Query: 421 N 423
           N
Sbjct: 64  N 64


>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 176

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = -2

Query: 542 FFVYGPLGPKPVIAQYISLGLTVLSFSYPTS--IW-SSFPGMKFSTSTSHFFARSYIIFF 372
           F+++  + P+ V+ +  +  LT  ++ +     +W +  PGMK    T  F  R Y +FF
Sbjct: 90  FYIFYTM-PRDVMQEAAAQELTNRNWRFHKELRVWLTPVPGMKPLQRTPQF-ERGYYMFF 147

Query: 371 PSCDLKSIQMLFLFLF 324
                K I+  FL ++
Sbjct: 148 DPIHWKRIKKDFLLMY 163


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 168  LKSYSSWSVLYYDLGRFRRECNKS 239
            L  Y   +VLY++ G FRR C+ S
Sbjct: 1431 LVEYGPPAVLYHNNGHFRRMCDGS 1454


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +1

Query: 178 IVAGP-FCTM-TLGDLGANVIKVESLSGDEARKWGPPFMKDCGDSYYFQSVNRNKKSICI 351
           +VAG  +C + +L D+    IK + L G  A+ +G   +   GD  Y        K I  
Sbjct: 379 LVAGKSWCKVRSLVDVNKKSIK-QVLPGQAAQVYGWKDLPIAGDLAYEVKSESEAKRILS 437

Query: 352 DFKSQEGKKIIYDLAK 399
           D   Q  ++  Y+LA+
Sbjct: 438 DIYRQSNEQNFYELAE 453


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -2

Query: 539 FVYGPLGPKPVIAQYISLGLTVLSFSYPTSIWSSFPGMKFSTSTSHFF 396
           FV      KP  + +   G+  L F YP   W  F  M++ +    FF
Sbjct: 29  FVNNTTISKPYFSTFFEGGIHSLLFFYPKRNWWFFIKMRYLSFFFEFF 76



 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/49 (18%), Positives = 25/49 (51%)
 Frame = -2

Query: 506 IAQYISLGLTVLSFSYPTSIWSSFPGMKFSTSTSHFFARSYIIFFPSCD 360
           +  Y++    + +++  +S+W +      + +  ++F    II+ PSC+
Sbjct: 307 VGVYLAGTAFLYNYTNGSSVWQTHMEGLMNKALDYYFTSDKIIYEPSCE 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,124
Number of Sequences: 5004
Number of extensions: 44634
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)