Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18p09
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    26   5.0  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    25   6.6  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    25   6.6  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   6.6  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   8.8  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   8.8  

>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 76  SHWCGAFILFEFLLQSVLI 132
           S W G F+L+E +L +VL+
Sbjct: 127 SEWMGYFLLYESMLDTVLV 145


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -2

Query: 467 NKIKIGFPLSMFCCFFNYIFSCNLE*YKVVEIKSNTVFLCVLWLI 333
           N   I    ++F  +  + F C LE +  +E + +  FLC+L ++
Sbjct: 251 NSFFINVQTNLFV-YHPHFFKCRLEIFLAMENQIDAGFLCILLMV 294


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 360 SIRFNLNHFVLLEITTKYIVEKATKHA*WKADFYFIILVILV 485
           SI     HF+L  + TKYI +  +        F FI +++++
Sbjct: 191 SIAIQFIHFILASMPTKYIAKLNSVGTYLNTLFLFISMIVIL 232


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 298 LQWECLQSKSGGISHNTHKNTVLDLI 375
           +QWE L+    G+ +  +K+ + D+I
Sbjct: 118 MQWEALKKSINGLINKVNKSNIRDII 143


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 173 YSKNYLLLGDTKITIRTL*SKNSNKINAP 87
           + KNYLL G TK+ +       S +I++P
Sbjct: 34  FRKNYLLNGRTKLKLENFAYNASTEISSP 62


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 170 NTNYQNLLISGCILDLK 220
           NTN + L+I GC+L LK
Sbjct: 732 NTNQKRLIIHGCLLWLK 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,729
Number of Sequences: 5004
Number of extensions: 49327
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)