Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18p09
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0057 + 17705023-17705143,17706186-17706538,17708002-177080...    28   6.8  

>01_05_0057 +
           17705023-17705143,17706186-17706538,17708002-17708044,
           17708698-17709140
          Length = 319

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 193 NKWMYFRSKT*CIVSTAQSPFCLLKWKRLPEPIDGLQWECLQ-SKSGGISHNTHKN 357
           N+W   R  + C   +  + FC L+++  P  ID  Q   LQ +K   ++   H N
Sbjct: 16  NRWYELRLGSSCRDPSPTAKFCTLRYEFKPASIDKTQAGSLQKTKDNRVTVEFHNN 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,029,682
Number of Sequences: 37544
Number of extensions: 262931
Number of successful extensions: 448
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)