Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18p09
         (618 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY358831-1|AAQ89190.1|  512|Homo sapiens MUC13 protein.                29   9.9  
AK000070-1|BAA90925.1|  277|Homo sapiens protein ( Homo sapiens ...    29   9.9  
AF286113-1|AAK56861.1|  512|Homo sapiens transmembrane mucin MUC...    29   9.9  
AB035807-1|BAB19651.1|  512|Homo sapiens down-regulated in colon...    29   9.9  

>AY358831-1|AAQ89190.1|  512|Homo sapiens MUC13 protein.
          Length = 512

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 244 QSPFCLLKWKRLPEPIDGLQWECLQSKSGG 333
           QSPFC+    + P+  +    +CL  KSGG
Sbjct: 356 QSPFCVASSLKCPDACNAQHKQCLIKKSGG 385


>AK000070-1|BAA90925.1|  277|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20063 fis, clone COL01524. ).
          Length = 277

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 244 QSPFCLLKWKRLPEPIDGLQWECLQSKSGG 333
           QSPFC+    + P+  +    +CL  KSGG
Sbjct: 121 QSPFCVASSLKCPDACNAQHKQCLIKKSGG 150


>AF286113-1|AAK56861.1|  512|Homo sapiens transmembrane mucin MUC13
           protein.
          Length = 512

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 244 QSPFCLLKWKRLPEPIDGLQWECLQSKSGG 333
           QSPFC+    + P+  +    +CL  KSGG
Sbjct: 356 QSPFCVASSLKCPDACNAQHKQCLIKKSGG 385


>AB035807-1|BAB19651.1|  512|Homo sapiens down-regulated in colon
           cancer 1 protein.
          Length = 512

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 244 QSPFCLLKWKRLPEPIDGLQWECLQSKSGG 333
           QSPFC+    + P+  +    +CL  KSGG
Sbjct: 356 QSPFCVASSLKCPDACNAQHKQCLIKKSGG 385


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,958,213
Number of Sequences: 237096
Number of extensions: 1567721
Number of successful extensions: 2285
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2285
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)