Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18p08
         (420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   154   2e-38
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    27   5.5  
Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z75533-1|CAA99815.1|  423|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  154 bits (374), Expect = 2e-38
 Identities = 76/108 (70%), Positives = 82/108 (75%)
 Frame = +1

Query: 1   IFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 180
           IFASFNDTFVH+TD+SGRETI RVTGGMKVKADRDE+SPYAAMLAAQDVA++CK LGI A
Sbjct: 34  IFASFNDTFVHITDISGRETIVRVTGGMKVKADRDESSPYAAMLAAQDVADRCKQLGINA 93

Query: 181 LHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 324
           LHIKLRA            AQ          MKIGRIEDVTP+PSD T
Sbjct: 94  LHIKLRATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCT 141


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 144 CSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGSC-SFKYED 281
           C+R+    W N +A      WWK+N +  S     T   C SF + D
Sbjct: 492 CTRDKIFEWMNNVATDFRSEWWKKNNNLHSPNPSGTGQRCLSFAFGD 538


>Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical
           protein C13B4.1b protein.
          Length = 950

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 140 CAANIAA*GDASSRSAFTFMPPVTRAIVSRPDKSVT*TNV 21
           C+A++A  GDA+ ++ F + P    +I+     + T  NV
Sbjct: 495 CSADVAVVGDANDQTVFKYDPATKYSIIMATGDTSTKGNV 534


>Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical
           protein C13B4.1a protein.
          Length = 1010

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 140 CAANIAA*GDASSRSAFTFMPPVTRAIVSRPDKSVT*TNV 21
           C+A++A  GDA+ ++ F + P    +I+     + T  NV
Sbjct: 495 CSADVAVVGDANDQTVFKYDPATKYSIIMATGDTSTKGNV 534


>Z47809-1|CAA87779.1|  370|Caenorhabditis elegans Hypothetical
          protein F42A8.1 protein.
          Length = 370

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 54 GNYRPCHWWHEGE 92
          GN RP  WW EG+
Sbjct: 38 GNGRPAQWWQEGD 50


>Z75533-1|CAA99815.1|  423|Caenorhabditis elegans Hypothetical
           protein C54G4.2 protein.
          Length = 423

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 58  TIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 156
           T  ++  G+ ++  RD+ +PY  M A QD +EK
Sbjct: 260 TTGKMDDGI-IEESRDQLNPYDTMAALQDRSEK 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,119,930
Number of Sequences: 27780
Number of extensions: 179652
Number of successful extensions: 407
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)