Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18p06
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    26   0.26 
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    26   0.26 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.26 
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    25   0.59 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.3  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   9.6  

>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 62  QIT*PLCCTNQMICVWYKHRSLKYLK 139
           +I   LC T + I +W+++R +K+ K
Sbjct: 40  EIAHALCLTERQIKIWFQNRRMKWKK 65


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 62  QIT*PLCCTNQMICVWYKHRSLKYLK 139
           +I   LC T + I +W+++R +K+ K
Sbjct: 40  EIAHALCLTERQIKIWFQNRRMKWKK 65


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 62  QIT*PLCCTNQMICVWYKHRSLKYLK 139
           +I   LC T + I +W+++R +K+ K
Sbjct: 302 EIAHALCLTERQIKIWFQNRRMKWKK 327


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 62  QIT*PLCCTNQMICVWYKHRSLKYLK 139
           +I   LC T + I +W+++R +K  K
Sbjct: 40  EIAHALCLTERQIKIWFQNRRMKLKK 65


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 605 VRRPMGPAPSTSTTCPAETPPL 540
           V+ P+G   ST +TC  E   L
Sbjct: 486 VKSPLGSVSSTESTCSGEVASL 507


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/21 (33%), Positives = 8/21 (38%)
 Frame = +2

Query: 515 SRWAFTRARGAESRRDTWCWY 577
           S W    A       D WC+Y
Sbjct: 937 SSWVSDNAHKVVDASDVWCYY 957



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +2

Query: 416  YTETSSDITSTQLIFASSFLIT*PWKKERYWSPSRWAFTRA 538
            Y E   D      +  ++ ++T  W ++R+W   R+A   A
Sbjct: 1169 YPEVELDRELRPYLRTAAAILT--WNEKRFWERLRYAIPSA 1207


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 398 SAPRPQYTETSSDI 439
           S P PQY  TSS I
Sbjct: 436 SQPSPQYPSTSSHI 449


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 250  HEASGVVAKIGSKVKNLTVGDRVAIEP 330
            H A  VVA   S V N+T      + P
Sbjct: 943  HSAQSVVASSASNVTNVTTNLTTILPP 969


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = -2

Query: 136 QIFQGSVFVPNANHLVCTTKRLGYL 62
           ++++ S+FVP   + +  +KR+  L
Sbjct: 135 ELYEESLFVPYITNFIIYSKRMDVL 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,264
Number of Sequences: 438
Number of extensions: 3975
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)