Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18p03
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    27   1.8  
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    27   3.1  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   9.6  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    25   9.6  
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...    25   9.6  
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    25   9.6  

>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 506 CCNGSSC*ISNFCHFKCVPVHWVG 435
           C  GSSC  SN  + +C+PV + G
Sbjct: 44  CVVGSSCIYSNPWYSQCIPVDYTG 67


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 156 LEALADARIKYDDIQQAVCGYVFGDSTCGQRVLYQVGMTGIPIYNV 293
           L  ++   +KYDDI +    YV+ DS+ G  +   V  TG+ I++V
Sbjct: 189 LARISHKSVKYDDIGK----YVY-DSSAGDNITAYVVDTGVSIHHV 229


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 129  YPDFGKEAVLEALADARIKYDDIQ 200
            Y DFG    +    D  ++Y+DIQ
Sbjct: 1177 YSDFGSALYVSPPTDPEVRYEDIQ 1200


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = +3

Query: 252 LYQVGMTGIPIYNVNNNCSTGSNALFLSKQLIEGGMCDVALAVGFEKMAPGA 407
           +Y +G+ GI ++ +N+N  T    L L    + GG+  ++  +  + ++  A
Sbjct: 426 MYVLGILGIILFGINDNHYTRPLVLVLILAGMGGGLLTLSAQIAVQSVSSHA 477


>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 431 VIEMTTSQSTGSHFLESYGKCYIT 360
           V E+   Q     +LE YGK YIT
Sbjct: 423 VYELFLDQKRSVEYLEEYGKNYIT 446


>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/63 (17%), Positives = 30/63 (47%)
 Frame = +3

Query: 420 HFDDRTNPMDRHTLKMAEIADLTGAPITAQYFGNAAIEHMKKYETTELHLAKIAAKITVM 599
           H+D++   + ++  +     D+ G P+  +  GN  ++ + +  T E  +  +  +  ++
Sbjct: 91  HYDEK-EAVSKYYPQFYHKTDIDGRPVYVEQLGNIDLKKLYQITTPERMMQNLVYEYEML 149

Query: 600 ELK 608
            LK
Sbjct: 150 ALK 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,070
Number of Sequences: 5004
Number of extensions: 58183
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)