Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18p01
(457 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 97 1e-21
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 38 0.001
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 29 0.26
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 1.0
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 2.4
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 26 3.1
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 25 4.2
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 25 7.3
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 24 9.6
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 97.1 bits (231), Expect = 1e-21
Identities = 49/95 (51%), Positives = 56/95 (58%)
Frame = +1
Query: 154 IFSLYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAMXXXXXXXXXXXXX 333
I LY + + GE G FL +TSPY WG LGIA VA ++GAA
Sbjct: 17 IVGLYMLFHNSGESFDFGSFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFICGTSILGGA 76
Query: 334 XKAPRIKTKNLISVIFCEAVAIYGLITAIVLSGML 438
KAPRIKTKNLIS+IFCE VAIY LI AIV S +
Sbjct: 77 VKAPRIKTKNLISIIFCEVVAIYSLIIAIVFSAKI 111
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 37.5 bits (83), Expect = 0.001
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +1
Query: 238 WGTLGIAFSVALSVVGAAMXXXXXXXXXXXXXXKAPRIKTKNLISVIFCEAVAIYGLITA 417
+G +G ++ + GAA P + KN I V+ +AIYGL+ +
Sbjct: 13 FGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAIYGLVVS 72
Query: 418 IVLSGMLEK 444
+++SG L++
Sbjct: 73 VLISGNLKQ 81
Score = 33.1 bits (72), Expect = 0.021
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 247 LGIAFSVALSVVGAAMXXXXXXXXXXXXXXKAPRIKTKNLISVIFCEAVAIYGLITAIVL 426
LG SV L+ + A + PR+ ++ +IF E + +YGLI A++L
Sbjct: 92 LGAGLSVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVAMILILIFAEVLGLYGLIVALLL 151
Query: 427 S 429
+
Sbjct: 152 N 152
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 29.5 bits (63), Expect = 0.26
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 106 YFLSYLFVLLVGLAIPIF-SLYYVLNGKGEQISLGWFLENTSPY 234
Y L L L+G+ F ++YY L + + +L FL+NT PY
Sbjct: 302 YALRDLAAFLLGIVCDRFGNVYYTLKPRVTRTALKAFLDNTKPY 345
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.5 bits (58), Expect = 1.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 426 EHDSSDQTVNGDGLAEDDGDQILSLDSRCFDTSSHYXDTSSVDAHGCSDNGQGNGKGD 253
E D++ +N A +G +L+ DS +++ +S VD+H S N KG+
Sbjct: 22 EQDAASVKINSTR-ASPNGSDLLNDDSEAAKITTNEKQSSPVDSHNESPNDTTINKGE 78
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 26.2 bits (55), Expect = 2.4
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +1
Query: 73 TKYLNQNLKMRYFLSYLFVLLVGLAIPIFSLYYVLN 180
+ ++N+N+ +R ++S++ + +A SLY+ LN
Sbjct: 2008 SSFINENMYLRLWISHIASWIYAVASASGSLYFSLN 2043
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 3.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 163 LYYVLNGKGEQISLGWFLENTSPYMWGTLGIAFSVALSVVGAAM 294
L + LN K ++ + S + WG S+AL++VGA +
Sbjct: 785 LTFGLNSKDRKLDAKRLTKIVSGFHWGICQNVDSIALNIVGAGI 828
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 25.4 bits (53), Expect = 4.2
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -3
Query: 440 SSIPESTIAVIKP*MATASQKMTEIKFLVLILGAL 336
S IPES IAV+ MA + M++ + +V L AL
Sbjct: 322 SIIPESLIAVLSITMAMGQKNMSKRRVIVRKLEAL 356
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 24.6 bits (51), Expect = 7.3
Identities = 8/36 (22%), Positives = 19/36 (52%)
Frame = +3
Query: 120 LIRAPGGTCNPDIFAVLRPQWKG*ADKFGMVLGEHF 227
L++AP C+P ++ +L + + ++ E+F
Sbjct: 13 LLKAPLAECDPTVYKILESEKSRQKESIALIASENF 48
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 24.2 bits (50), Expect = 9.6
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 5/24 (20%)
Frame = -1
Query: 238 TYTGKCS-----PRTIPNLSAHPF 182
TY KCS RT+P+ S HP+
Sbjct: 237 TYRSKCSFERRFARTVPDASRHPY 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,738
Number of Sequences: 5004
Number of extensions: 39645
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -