Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18o23
         (505 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U05012-1|AAA75374.1|  825|Homo sapiens TrkC protein.                   29   9.2  
S76476-1|AAB33112.1|  612|Homo sapiens trkC protein.                   29   9.2  
S76475-1|AAB33111.1|  839|Homo sapiens trkC protein.                   29   9.2  
BT007291-1|AAP35955.1|  612|Homo sapiens neurotrophic tyrosine k...    29   9.2  
BC013693-1|AAH13693.1|  612|Homo sapiens neurotrophic tyrosine k...    29   9.2  
AJ224521-1|CAA12029.1|  839|Homo sapiens TRKC protein.                 29   9.2  

>U05012-1|AAA75374.1|  825|Homo sapiens TrkC protein.
          Length = 825

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 309 VGVSRREGDQVFVKGNGLMQPLPG---LVQGINSITNSQT 199
           V ++ REGD   +  NG   PLP    +V G+ SI   QT
Sbjct: 217 VNLTVREGDNAVITCNGSGSPLPDVDWIVTGLQSINTHQT 256


>S76476-1|AAB33112.1|  612|Homo sapiens trkC protein.
          Length = 612

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 309 VGVSRREGDQVFVKGNGLMQPLPG---LVQGINSITNSQT 199
           V ++ REGD   +  NG   PLP    +V G+ SI   QT
Sbjct: 217 VNLTVREGDNAVITCNGSGSPLPDVDWIVTGLQSINTHQT 256


>S76475-1|AAB33111.1|  839|Homo sapiens trkC protein.
          Length = 839

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 309 VGVSRREGDQVFVKGNGLMQPLPG---LVQGINSITNSQT 199
           V ++ REGD   +  NG   PLP    +V G+ SI   QT
Sbjct: 217 VNLTVREGDNAVITCNGSGSPLPDVDWIVTGLQSINTHQT 256


>BT007291-1|AAP35955.1|  612|Homo sapiens neurotrophic tyrosine
           kinase, receptor, type 3 protein.
          Length = 612

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 309 VGVSRREGDQVFVKGNGLMQPLPG---LVQGINSITNSQT 199
           V ++ REGD   +  NG   PLP    +V G+ SI   QT
Sbjct: 217 VNLTVREGDNAVITCNGSGSPLPDVDWIVTGLQSINTHQT 256


>BC013693-1|AAH13693.1|  612|Homo sapiens neurotrophic tyrosine
           kinase, receptor, type 3 protein.
          Length = 612

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 309 VGVSRREGDQVFVKGNGLMQPLPG---LVQGINSITNSQT 199
           V ++ REGD   +  NG   PLP    +V G+ SI   QT
Sbjct: 217 VNLTVREGDNAVITCNGSGSPLPDVDWIVTGLQSINTHQT 256


>AJ224521-1|CAA12029.1|  839|Homo sapiens TRKC protein.
          Length = 839

 Score = 29.1 bits (62), Expect = 9.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -2

Query: 309 VGVSRREGDQVFVKGNGLMQPLPG---LVQGINSITNSQT 199
           V ++ REGD   +  NG   PLP    +V G+ SI   QT
Sbjct: 217 VNLTVREGDNAVITCNGSGSPLPDVDWIVTGLQSINTHQT 256


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,090,823
Number of Sequences: 237096
Number of extensions: 1450724
Number of successful extensions: 2421
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2421
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)