Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18o12
         (500 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC104868-1|AAI04869.1|  791|Homo sapiens transient receptor pote...    31   1.7  
BC104866-1|AAI04867.1|  791|Homo sapiens transient receptor pote...    31   1.7  
AY118268-1|AAM80559.1|  791|Homo sapiens vanilloid receptor like...    31   1.7  
AY118267-1|AAM80558.1|  765|Homo sapiens vanilloid receptor like...    31   1.7  
AJ487035-1|CAD31711.2|  790|Homo sapiens vanilloid receptor-like...    31   1.7  
AF514998-1|AAM54027.1|  790|Homo sapiens cation channel TRPV3 pr...    31   1.7  
AK124035-1|BAC85757.1|  244|Homo sapiens protein ( Homo sapiens ...    30   5.2  

>BC104868-1|AAI04869.1|  791|Homo sapiens transient receptor
           potential cation channel, subfamily V, member 3 protein.
          Length = 791

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 334 VSEESVDSGVGRCSSQSGSERESDXTPRGAEQSAPVDIPDSEDMQRRKEEARRKR 498
           V  + +DS + +C S +  + +S  +P+      P + P+S   Q  KEE RRK+
Sbjct: 63  VFSKPMDSNIRQCISGNCDDMDSPQSPQDDVTETPSN-PNSPSAQLAKEEQRRKK 116


>BC104866-1|AAI04867.1|  791|Homo sapiens transient receptor
           potential cation channel, subfamily V, member 3 protein.
          Length = 791

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 334 VSEESVDSGVGRCSSQSGSERESDXTPRGAEQSAPVDIPDSEDMQRRKEEARRKR 498
           V  + +DS + +C S +  + +S  +P+      P + P+S   Q  KEE RRK+
Sbjct: 63  VFSKPMDSNIRQCISGNCDDMDSPQSPQDDVTETPSN-PNSPSAQLAKEEQRRKK 116


>AY118268-1|AAM80559.1|  791|Homo sapiens vanilloid receptor like 3
           protein splice variant a protein.
          Length = 791

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 334 VSEESVDSGVGRCSSQSGSERESDXTPRGAEQSAPVDIPDSEDMQRRKEEARRKR 498
           V  + +DS + +C S +  + +S  +P+      P + P+S   Q  KEE RRK+
Sbjct: 63  VFSKPMDSNIRQCISGNCDDMDSPQSPQDDVTETPSN-PNSPSAQLAKEEQRRKK 116


>AY118267-1|AAM80558.1|  765|Homo sapiens vanilloid receptor like 3
           protein splice variant b protein.
          Length = 765

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 334 VSEESVDSGVGRCSSQSGSERESDXTPRGAEQSAPVDIPDSEDMQRRKEEARRKR 498
           V  + +DS + +C S +  + +S  +P+      P + P+S   Q  KEE RRK+
Sbjct: 63  VFSKPMDSNIRQCISGNCDDMDSPQSPQDDVTETPSN-PNSPSAQLAKEEQRRKK 116


>AJ487035-1|CAD31711.2|  790|Homo sapiens vanilloid receptor-like 3
           protein.
          Length = 790

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 334 VSEESVDSGVGRCSSQSGSERESDXTPRGAEQSAPVDIPDSEDMQRRKEEARRKR 498
           V  + +DS + +C S +  + +S  +P+      P + P+S   Q  KEE RRK+
Sbjct: 63  VFSKPMDSNIRQCISGNCDDMDSPQSPQDDVTETPSN-PNSPSAQLAKEEQRRKK 116


>AF514998-1|AAM54027.1|  790|Homo sapiens cation channel TRPV3
           protein.
          Length = 790

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 334 VSEESVDSGVGRCSSQSGSERESDXTPRGAEQSAPVDIPDSEDMQRRKEEARRKR 498
           V  + +DS + +C S +  + +S  +P+      P + P+S   Q  KEE RRK+
Sbjct: 63  VFSKPMDSNIRQCISGNCDDMDSPQSPQDDVTETPSN-PNSPSAQLAKEEQRRKK 116


>AK124035-1|BAC85757.1|  244|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42041 fis, clone SPLEN2040222. ).
          Length = 244

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = -1

Query: 425 SAPLGVSSDSRSLPDWLLQRPT---PLSTLS 342
           SA L +SS S +LP WLL +PT   PL TL+
Sbjct: 9   SALLNLSSLSLTLPQWLLYQPTKKAPLPTLA 39


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,504,386
Number of Sequences: 237096
Number of extensions: 1129492
Number of successful extensions: 6810
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6810
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4593178062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)