Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18o12
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   3.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   3.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.5  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +2

Query: 95  FITFRHNLRTSFSTVVLFSLISRIIFGVFFFLHLLTLYRFH 217
           F+T   + +   + + +++ +  +IF + F+  LL+  R H
Sbjct: 210 FLTDDEDTKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRNH 250


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +2

Query: 95  FITFRHNLRTSFSTVVLFSLISRIIFGVFFFLHLLTLYRFH 217
           F+T   + +   + + +++ +  +IF + F+  LL+  R H
Sbjct: 210 FLTDDEDTKVFVTCIFIWAYVIPLIFIILFYSRLLSSIRNH 250


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 248 LSNLWRSPY 222
           L NLWR PY
Sbjct: 39  LGNLWRFPY 47


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 248 LSNLWRSPY 222
           L NLWR PY
Sbjct: 92  LGNLWRFPY 100


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 391 ERESDXTPRGAEQSAPVDIPDSEDM 465
           ER+   TP  +   +PV  PD  D+
Sbjct: 430 ERDPILTPPSSNPVSPVPSPDPLDL 454


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,403
Number of Sequences: 438
Number of extensions: 2162
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)