Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18o06
         (534 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U79136-1|AAB70662.1|  676|Homo sapiens Hermansky-Pudlak syndrome...    29   7.8  
AB083594-1|BAB89307.1|  388|Homo sapiens putative G-protein coup...    29   7.8  

>U79136-1|AAB70662.1|  676|Homo sapiens Hermansky-Pudlak syndrome
           protein protein.
          Length = 676

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +3

Query: 12  STSSPHMLSYLQEYKTKVVKIKITNQLNFVCVSSHLRI*SNY----QHVLGINNGTQQTV 179
           S   PH+  +LQ+   ++++ K+T+  +F+ V S   I   Y     H + ++  T Q V
Sbjct: 472 SRGGPHLPQHLQDQVQRLMREKLTDWKDFLLVKSRRNITMVYFPGLVHFIYVDRTTGQMV 531

Query: 180 HPS 188
            PS
Sbjct: 532 APS 534


>AB083594-1|BAB89307.1|  388|Homo sapiens putative G-protein coupled
           receptor protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 259 VMVVVDGK-NFLVCTLQKNKCIQVPLDLYFKTGDSIAFLTNGKCNVHL 399
           +MVV++ K NF + +    +C  V L L  K+ DSI F + G  N H+
Sbjct: 6   LMVVLEYKHNFKIVSTNCMRCYLVMLRLSLKSIDSIIFTSMGVQNKHM 53


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,676,748
Number of Sequences: 237096
Number of extensions: 1428679
Number of successful extensions: 6177
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6177
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5216942984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)