Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18n23
         (420 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.5  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    20   9.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    20   9.9  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 195 IEKIIHPKLLIEENANS 145
           I+K++  KLLI +NA S
Sbjct: 476 IKKLLRYKLLISQNAVS 492


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 353 FXSVGGLPPFMGFIP 397
           F  +G L PF  FIP
Sbjct: 145 FRHIGPLTPFPRFIP 159


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 353 FXSVGGLPPFMGFIP 397
           F  +G L PF  FIP
Sbjct: 386 FRHIGPLTPFPRFIP 400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,975
Number of Sequences: 438
Number of extensions: 411
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)