Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18n17
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   0.23 
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    23   2.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   3.8  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   3.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   3.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.0  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   6.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 225 IASMAYSTWNSL-PSGLNVLTPRSYSERVRNILLLGYS 115
           ++S  +  W  L  SG+   TPRS+S RV  ++  G++
Sbjct: 610 LSSAVWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFA 647


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 288 FSTAKTTPSEVQMPIAVEPSLIASMAYSTWNSLPSGLN 175
           + T +T   +V+  +A   S I       WN +P G N
Sbjct: 41  YQTLQTHMKKVREQMAGILSRIPEQGVVNWNKIPEGAN 78


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 380  PLDPKRRKRCVDLLQQSFRWSWVP 309
            P  P    RC  L  QS + SW P
Sbjct: 1111 PSIPPEDVRCAALTSQSLQVSWQP 1134


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 380  PLDPKRRKRCVDLLQQSFRWSWVP 309
            P  P    RC  L  QS + SW P
Sbjct: 1107 PSIPPEDVRCAALTSQSLQVSWQP 1130


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 368 KRRKRCVDLLQQSFRWSWVPSKLK 297
           K  K   ++ + SF+++WV  KLK
Sbjct: 41  KFEKEAQEMGKGSFKYAWVLDKLK 64


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 575 QCLQT*QQHQMAVTWLFRYHRHCLQTV*LSW 483
           QC  T  Q    ++WLF      L +V L W
Sbjct: 232 QCEATTMQENDKMSWLFESEDVLLPSVYLRW 262


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 368 KRRKRCVDLLQQSFRWSWVPSKLK 297
           K  K   ++ + SF+++WV  KLK
Sbjct: 41  KFEKEAQEMGKGSFKYAWVLDKLK 64


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 284 PPPKQLPPKYK 252
           PPP+Q PP  K
Sbjct: 394 PPPRQTPPSRK 404


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 395 RSWSRPLDP 369
           RSWSRP +P
Sbjct: 166 RSWSRPREP 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,727
Number of Sequences: 438
Number of extensions: 3981
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)