Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18n14
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   3.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.6  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   7.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.6  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 146 ISSAYRGRKTVLTKCLNTKESLKPSSN*RTTESKKSLNT 262
           +++ YR +KTV  K +N+K  LK +   +    +   NT
Sbjct: 315 VNTIYRRKKTVPLKKVNSKYILKSTLTPKLARKQFQKNT 353


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +2

Query: 131 TYPWTISSAYRGRKTVLTKCLNTKESLKP 217
           T+P      Y+GR  V+  C+   +  +P
Sbjct: 83  TFPTIKIVGYKGRALVVVSCVTKDQPYRP 111


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +2

Query: 131 TYPWTISSAYRGRKTVLTKCLNTKESLKP 217
           T+P      Y+GR  V+  C+   +  +P
Sbjct: 83  TFPTIKIVGYKGRALVVVSCVTKDQPYRP 111


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 356 RSIMFL*RNGLYLRSSVAPRV*AD 285
           RS++   RNG  +  +++PR  AD
Sbjct: 360 RSVVVQKRNGSMIECNISPRSSAD 383


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 178 VNKMLEHERITQAVIELTDDRIKEIA 255
           +NK+ EH+ +    IE +++  K+ A
Sbjct: 175 INKIKEHDTVLVVNIEKSENESKKYA 200


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 148 LVSLSGTEDGVNKMLEHERITQAVIE 225
           L +   T DGVN +++H+  ++A  E
Sbjct: 167 LTAFLTTLDGVNDVVQHQSGSEAEAE 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,280
Number of Sequences: 438
Number of extensions: 2509
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)