Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18n09
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           30   0.21 
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    29   0.37 
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   3.4  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    25   6.0  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    25   7.9  

>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
 Frame = -3

Query: 459 PTGSPTPSRTISFLR-----KSWPSQFPYPRETSS 370
           PT SP  S ++SF+        WPSQ+ +P++T S
Sbjct: 232 PTTSPINSTSLSFVDAKKPGSKWPSQYDFPKKTKS 266


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 420 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELTGRHEP 539
           G++  AMVW   +DT+GRR      F  +G+  +     P
Sbjct: 130 GLLVGAMVWSLSADTIGRRWAFNLTFLFTGVFAVIAGASP 169


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 393 GTVTAMTYGGMISSAMVWGFLSDTLGRR 476
           G V A T  G I   +++GFL D  GR+
Sbjct: 86  GVVNAATNIGNIMGQLLFGFLGDFFGRK 113


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 420 GMISSAMVWGFLSDTLGRRQIMVWGFFCSGLVELT 524
           G I+  +VW  LS+  GR+  ++ G F  G+  ++
Sbjct: 182 GYIAGPIVWAPLSELSGRKLPLLIGMFGFGIFNIS 216


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 526 PVSSTR-PEQKKPHTMIWRRPSVSDRKPHT 440
           P+S T+ P + K    +W R  VSD++ +T
Sbjct: 79  PMSYTKQPSEAKYPNSVWERKGVSDQEENT 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,768,291
Number of Sequences: 5004
Number of extensions: 28024
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)