Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18n02
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    27   1.4  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    27   1.9  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    27   2.5  
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    27   2.5  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   3.3  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    25   5.8  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    25   5.8  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   7.7  

>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 434 WVSVGSTKNTSICFNCYGFGFPCSSVLSFLVLRGLI 327
           W +  S    S+CFN   FG     +L  +   G+I
Sbjct: 312 WFNAASAIGASLCFNASKFGKKIFEILRLMFFSGII 347


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -3

Query: 466 GERRELVGSMPGSVLGPLRTLAYVSTVMVLDSL 368
           G RR  +G+MPG ++  L+ +   + ++++D +
Sbjct: 615 GHRRTYIGAMPGKIVQALKKVQTENPLILIDEI 647


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 291 DEELSEMADGVNNEASKDQKRKD 359
           DE++SE+ +GVN+   K+  +K+
Sbjct: 60  DEQISELVNGVNSTTIKENTKKE 82


>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 466 GERRELVGSMPGSVLGPLRTLAYVSTVMVLDS 371
           G   ELV S+P  V    R L+ VST +++DS
Sbjct: 268 GTVSELVESVPNDVAEVQRRLSSVSTALLIDS 299


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 144 F*KTKFS*WTNSIFELSFILSCAPRVYED 230
           F K  FS W+N   ++ FIL C  + Y D
Sbjct: 899 FAKLLFSTWSNLPSDIGFILECMLKEYYD 927


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 321 VNNEASKDQKRKDRGARESK 380
           +  E  K+QKRK+R ARE++
Sbjct: 40  LEKEREKEQKRKEREAREAE 59


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
 Frame = +3

Query: 303 SEMADGVNNEASKDQKR-KDRGARESKTITVETYASVLSGPNTD---PGILPT 449
           S   DG N +  KDQK+ K +      T T        SGP+     P ++PT
Sbjct: 10  SNFGDGANGDNKKDQKKDKPKYEPPVPTRTGRRKKKAQSGPDASAKLPTVIPT 62


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +3

Query: 285 EIDEELSEMADGVNNEASKDQKRKDRGARESKTITVETYASVLSGPNTDPG 437
           ++  + S+ A+G      K  K+K   A++    T       LSG +T+ G
Sbjct: 541 KLANDTSKNANGETKSTPKKSKKKTSKAQQEANSTTAEGKEKLSGDSTETG 591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,796
Number of Sequences: 5004
Number of extensions: 43827
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)