Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18n02
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0540 + 4691929-4692014,4692915-4693125,4693756-4693885,469... 33 0.16
09_06_0067 - 20645012-20645095,20645365-20645466,20645583-206458... 32 0.27
11_01_0605 + 4821363-4823246 30 1.1
05_03_0087 + 8286700-8288088 29 3.4
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 28 5.9
06_01_0075 + 615415-616061,616144-616295,616829-617865 28 5.9
05_01_0016 - 118975-119244,119363-119423,119934-120038,120601-12... 28 5.9
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 27 7.8
>08_01_0540 +
4691929-4692014,4692915-4693125,4693756-4693885,
4695422-4696072,4696179-4696395,4697040-4697111,
4697167-4697257,4697367-4698363,4698914-4699044,
4699584-4699802,4700110-4700805,4700912-4701121,
4701606-4701710
Length = 1271
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +3
Query: 276 LRIEIDEELSEMADGVNNEASKDQKRKDRGARESKTIT----VETYASVLS 416
L ++ D+E + +AD + D+ RKD GA S T VET AS+++
Sbjct: 521 LNLDDDDEAAPVADNKGEQTKNDEPRKDLGAGSSSTAAGTGDVETCASLMN 571
>09_06_0067 -
20645012-20645095,20645365-20645466,20645583-20645828,
20646042-20646236,20646343-20646636,20646952-20647134,
20647534-20647593,20647796-20648002,20648081-20648282,
20648367-20648494,20648759-20648842,20648955-20649134,
20649281-20649372,20649620-20649789,20650226-20650337,
20650451-20650554,20651262-20651371
Length = 850
Score = 32.3 bits (70), Expect = 0.27
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -3
Query: 466 GERRELVGSMPGSVLGPLRTLAYVSTVMVLDSL 368
G RR +GSMPG ++ L+ ++ + VM+LD +
Sbjct: 445 GHRRTYIGSMPGRLIDGLKRVSVSNPVMLLDEI 477
>11_01_0605 + 4821363-4823246
Length = 627
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 428 SVGSTKNTSICFN-CYGFGFPCSSVLS 351
SVGSTKN + C N C G CSSV S
Sbjct: 54 SVGSTKNWNTCSNPCQWSGVHCSSVAS 80
>05_03_0087 + 8286700-8288088
Length = 462
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 306 EMADGVNNEASKDQKRKDRGARE----SKTITVETYASVLSGPNTDPGI 440
++ADG +N A K+Q+RK+ RE K + E S SG G+
Sbjct: 90 DVADGDSNNAEKEQRRKEEFDRERRRKGKMVAEEESPSTASGGGMPIGL 138
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = -3
Query: 466 GERRELVGSMPGSVLGPLRTLAYVSTVMVLDSL 368
G RR VG+MPG ++ L+++ + ++++D +
Sbjct: 505 GHRRTYVGAMPGKMVQCLKSVGTANPLVLIDEI 537
>06_01_0075 + 615415-616061,616144-616295,616829-617865
Length = 611
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -2
Query: 440 YAWVSVGSTKNTSICFNCYGFG 375
Y W+ K+ + CF CY FG
Sbjct: 149 YPWIEYSVDKDATFCFVCYLFG 170
>05_01_0016 -
118975-119244,119363-119423,119934-120038,120601-120663,
120845-120963
Length = 205
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 475 PAVYLXTITLLGFFCGNPLVEITKGILH 558
P V + T +GFFCG+P V I+H
Sbjct: 119 PDVDTDSSTQVGFFCGSPPVRANNPIVH 146
>12_01_0797 +
7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 300 LSEMADGVNNEASKDQKRKDRGARESKT 383
L ++ NN ++K KRK +G++E KT
Sbjct: 628 LDKLHKSTNNGSNKGGKRKKKGSKEQKT 655
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,187,319
Number of Sequences: 37544
Number of extensions: 243769
Number of successful extensions: 532
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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