Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18n02
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    22   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.6  

>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 434 WVSVGSTKNTSICFN-CYGFGFPCSSVLSFLV 342
           W+ VG+   + I  N  Y   FP S +LSFL+
Sbjct: 39  WLFVGTYFPSLIGANEHYSKFFPVSEILSFLI 70


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 297 ELSEMADGVNNEASKDQKRKDRGARESKT 383
           +L E ADG     S  ++ KDRG+RE  T
Sbjct: 303 KLDEDADGA---VSPLRREKDRGSREYPT 328



 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 339  KDQKRKDRGARESKTITVETYAS 407
            +DQK+ D   +E+ T+T    A+
Sbjct: 1091 RDQKQSDDKTKETSTVTAAAAAT 1113


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 182 NTICPLRKLCFLKNSFKRISYKGYSN 105
           N +    K C    +F+ +++ GYSN
Sbjct: 292 NIVTSYCKTCISGRAFQVLTWLGYSN 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,372
Number of Sequences: 438
Number of extensions: 2958
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)