Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18n01
         (195 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    26   0.60 
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   1.0  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    25   1.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   1.8  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    23   4.2  
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    23   5.6  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    23   7.4  
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    22   9.7  
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c...    22   9.7  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 113 KSNYFVKIIQLLDEYPKCFIVGADDV 190
           K+ YF K+  L ++Y   F+V  D+V
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNV 33


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 11  FVPHGSRAFCLVLKFHRSPYA 73
           F+PHG+R +  +LK+ R  Y+
Sbjct: 313 FLPHGARIYNTLLKYMRYQYS 333


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 10  ICPARKSCVLSCP*ISSKSLRH 75
           I PA++   LSCP + SK + H
Sbjct: 490 IVPAKERAYLSCPKVWSKIINH 511


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 193  AHVIGTHDETFXVLVQELDDLNEVVRLPSSLVLPTHPG 80
            A    TH  +   L QE+  L   +RLP+ L  P++ G
Sbjct: 919  ADASATHQSSTG-LTQEITQLGSNMRLPTKLTRPSNDG 955


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 42  LSLNFIEVPTPHYP 83
           L LN  E+PT HYP
Sbjct: 243 LKLNESEIPTYHYP 256


>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 11  FVPHGSRAFCLVLKFHRSPY 70
           F+PHG+R +  ++ F R+ Y
Sbjct: 70  FLPHGTRIYNRLVDFLRAQY 89


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 11  FVPHGSRAFCLVLKFHRSPYAT 76
           F+P G+R   L ++F   P AT
Sbjct: 248 FIPEGNRKCSLCMEFIHCPAAT 269


>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 95  PYPSWIVWR 69
           PY SW+ WR
Sbjct: 212 PYHSWVYWR 220


>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 89  GREDKATWKSNYFVKI 136
           GR  KAT K NY VK+
Sbjct: 69  GRWAKATMKKNYGVKL 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 827,370
Number of Sequences: 5004
Number of extensions: 12373
Number of successful extensions: 23
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)