Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18m23
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    26   3.8  
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    26   5.0  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    26   5.0  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    25   6.6  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   6.6  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   8.7  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.7  
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    25   8.7  

>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -2

Query: 233 NKFYVFHLVNQQL 195
           NK+YV HLVNQQ+
Sbjct: 396 NKYYVRHLVNQQV 408


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 404 PDSNNEHIISHSLLDYQKPANYPTP 330
           P+ N  H++  SLL+Y+   +Y  P
Sbjct: 180 PNKNEAHLLVTSLLEYKLKGSYAAP 204


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 251 FVVHLKNKFYVFHLVNQQLQD 189
           F +H  N+   FHL++Q LQD
Sbjct: 721 FTLHFFNRHSPFHLISQFLQD 741


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 486 KTLCSKENIFGDSGLVCTNTISPPF 412
           +TLC++ N F +SG V   +   PF
Sbjct: 115 RTLCARPNTFFESGCVAHVSFGDPF 139


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 254 KITQPKKVNVMEDKSNFLLPNNQRFVELDSS 346
           ++T PK  +  +DK+  LLP N + +  D S
Sbjct: 2   QVTIPKSTSKEDDKNRNLLPKNVKPIHYDLS 32


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 413  NGGLIVLVQTSPESPKIFSLLHRVFVAEPLENLKQSALKSGVSED 547
            NG  +  +  S  SP++  L++RV        L  S+LKS +S++
Sbjct: 905  NGANVPALLNSFSSPQLSPLVNRVLNEPSSSPLSSSSLKSPLSKE 949


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 225 EFVLQVYNKIKSLSRKKLMSWKT 293
           EFVL  YN++  + +K LM++K+
Sbjct: 510 EFVLAAYNELIFIVKKDLMNFKS 532


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = +2

Query: 176 AKCRRLVIADSLNGKHRICSSGVQQNKITQPKKVNVMEDKSN-FLLPNNQRFVELDSSQA 352
           A+C  LV A+  NG+  +         +T     +     SN +    N    ++DSS  
Sbjct: 437 ARCELLVPANCKNGEPEVADDDAVDTSVTATDDFDASASSSNAYESYRNTYTDDMDSSSI 496

Query: 353 FDNLTTNEK 379
           +    +N K
Sbjct: 497 YQTSLSNVK 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,249
Number of Sequences: 5004
Number of extensions: 54100
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)