Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18m23
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0510 + 23558111-23559613 32 0.31
12_02_1261 + 27410921-27413401 29 2.2
01_05_0415 - 21940466-21941536 29 2.9
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 28 5.1
12_02_0507 + 19810446-19811048,19811220-19811466,19811590-198121... 28 6.8
11_06_0123 + 20334350-20334553,20335059-20335490,20336052-203361... 28 6.8
03_06_0446 - 33985668-33985940,33986008-33986085,33986151-339862... 28 6.8
03_06_0239 - 32578231-32578353,32578431-32578655,32579081-325792... 28 6.8
01_06_1222 - 35499069-35499287,35500319-35501734 28 6.8
07_03_1434 + 26529043-26529927,26530385-26530742,26530820-265310... 27 8.9
>02_04_0510 + 23558111-23559613
Length = 500
Score = 32.3 bits (70), Expect = 0.31
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Frame = +2
Query: 170 NLAKCRRLVIADSLNGKHRICSSGVQQNKITQPKKVNVMEDKSNFLLPNNQRF-VELDSS 346
+LAKC R ++L+ HR+ SSG + + + +N++ KS L +Q F VE+ +
Sbjct: 298 SLAKCERF--EEALSVSHRMKSSGCKPDTLFYNSLINLL-GKSGHLFEASQVFRVEMPMN 354
Query: 347 QAFDNLTTNEKLYAHYLSQAAWNGGLIVLVQTSPESPK 460
NL T + + + + L VL + +S K
Sbjct: 355 GVSHNLATYNTMISIFCYYGRDDDALNVLKEMEAQSCK 392
>12_02_1261 + 27410921-27413401
Length = 826
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +2
Query: 242 VQQNKITQPKK--VNVMEDKSNFLLPNNQRFVELDSSQAFDNLTTNEKLYAHYLSQAAWN 415
V Q TQ K+ +M++ + P++Q DS+ E+ + YLS N
Sbjct: 197 VPQETPTQKKRSVAELMDNDDDKATPHHQ-----DSATTISKSNKRERKKSKYLSPPYTN 251
Query: 416 GGLIVLVQTSPESPK 460
G I LVQ + +SPK
Sbjct: 252 LGGIALVQKASDSPK 266
>01_05_0415 - 21940466-21941536
Length = 356
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = +2
Query: 392 YLSQAAWNGGLIVLVQTSPESPKIFSLLHRVFVAEPLENLKQSALKSGVSEDDFQAFLVY 571
YLS++ W L+ + + P F +HR+F + + + + DD A +VY
Sbjct: 180 YLSRSCWPECLLAPYFPAGQPPAQFGNVHRLFRLNNVLRMMEETRRE--ERDDLMAAIVY 237
Query: 572 AGGLFANSGNY 604
+A Y
Sbjct: 238 EADAWARDPRY 248
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 218 KHRICSSGVQQNKITQPKKVNVMEDKSNFLLPNNQRFVELDSSQAFDNLTTNEKL 382
KH ++G+ ++ +PK V DKS + P + + SS+A +T E+L
Sbjct: 291 KHDAIAAGIAV-RVEKPKSVQARGDKSPSIKPEGAKQPDQRSSEAASTVTPFEQL 344
>12_02_0507 +
19810446-19811048,19811220-19811466,19811590-19812125,
19812397-19813620
Length = 869
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 488 VAEPLENLKQSALKSGVSEDDFQAFLVYAGGLFANSGNYKG 610
+AE L N K+ A++ G +ED + F A LFA+ N G
Sbjct: 426 IAESLTNCKRLAVECGAAEDSVEYFC--ATQLFASKHNRDG 464
>11_06_0123 +
20334350-20334553,20335059-20335490,20336052-20336191,
20336281-20336401,20337110-20337250,20337421-20337663
Length = 426
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 204 SAITRRRHFARLIVRFRIIELLCY 133
SA + R+H +R I+RF E+ CY
Sbjct: 249 SAASTRKHMSRFILRFLPTEVTCY 272
>03_06_0446 -
33985668-33985940,33986008-33986085,33986151-33986233,
33986709-33986766,33987677-33987933,33988140-33988413
Length = 340
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +1
Query: 121 CYLFIT*KFNDSESDY*P---CKMPASCNC*FTKWKT*NLFF 237
C +F+T K N S P C +SC+ +KW N+FF
Sbjct: 258 CPIFVTSKMNFSGQQKDPRTICGTRSSCDSTVSKWMVRNIFF 299
>03_06_0239 -
32578231-32578353,32578431-32578655,32579081-32579248,
32579331-32579446,32579540-32579692,32579779-32579922,
32580775-32581576
Length = 576
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 593 CWQIDLLHRREKPENHLQIHQ 531
C + ++HR KPEN L IHQ
Sbjct: 228 CHSLGVMHRDLKPENFLFIHQ 248
>01_06_1222 - 35499069-35499287,35500319-35501734
Length = 544
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 425 IVLVQTSPESPKIFSLLHRVFVAEPLENLKQSALKSGVSEDDFQAFLVYAG 577
+V VQT P+ P S +E L+NL + K G DF++F + G
Sbjct: 46 VVAVQTGPQKPSPSSSSQAGTESETLQNLLKREYKYGF-VSDFESFSIPKG 95
>07_03_1434 +
26529043-26529927,26530385-26530742,26530820-26531007,
26531082-26531271,26531343-26531447,26531521-26531597,
26531628-26531972
Length = 715
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +2
Query: 272 KVNVME---DKSNFLLPNNQRFVELDSSQAFDNLTTNEKLYAHYLSQAAWNGGLIVLVQT 442
K+N +E DK+ F NN LD+++ FD L Y + +A G + L T
Sbjct: 591 KINKLEGARDKAMFF--NNAGSSTLDAAEIFDKLRVAPYTYFKNIKEAESMGASLALAMT 648
Query: 443 SPESPKI 463
P++
Sbjct: 649 KSLYPRV 655
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,378,821
Number of Sequences: 37544
Number of extensions: 294755
Number of successful extensions: 711
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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