Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18m23
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              25   0.78 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.2  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +2

Query: 194 VIADSLNGKHRICSSGVQQNKITQPKKVNVMEDKSNFLLPNNQRFVE 334
           +I +  NG   +    VQ       KK NV+++  NF   N +  V+
Sbjct: 43  IIDEVYNGNVNVEDENVQSYVECMMKKFNVVDENGNFNEKNTRDIVQ 89


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 611 NLYSYRCWQIDLLHRREKPENHLQIH 534
           N   Y C ++DLL +RE     +QI+
Sbjct: 224 NTGEYSCLKVDLLFKREFSYYLIQIY 249


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 611 NLYSYRCWQIDLLHRREKPENHLQIH 534
           N   Y C ++DLL +RE     +QI+
Sbjct: 224 NTGEYSCLKVDLLFKREFSYYLIQIY 249


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 441 PVLSHQRYSPCCIE 482
           P   H++Y PCC E
Sbjct: 207 PAERHKKYYPCCDE 220


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 392 NEHIISHSLLDYQKPANYPTPRI 324
           N++II+H +L+Y    +   PRI
Sbjct: 786 NQNIITHMILNYVGSEDSVIPRI 808


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 375 SFVVRLSKACELSNSTNLWL 316
           SFV+      E SNS+  WL
Sbjct: 31  SFVMEPPSRVEFSNSSGAWL 50


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 375 SFVVRLSKACELSNSTNLWL 316
           SFV+      E SNS+  WL
Sbjct: 31  SFVMEPPSRVEFSNSSGAWL 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,924
Number of Sequences: 438
Number of extensions: 3704
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)