Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt18m21
(371 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 97 1e-21
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 27 1.2
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 2.2
SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase |S... 25 2.9
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family... 25 3.8
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 3.8
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 5.0
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 5.0
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 24 6.7
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 24 8.8
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 96.7 bits (230), Expect = 1e-21
Identities = 47/82 (57%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
Frame = +1
Query: 4 VLLDD-GFALRGLFIIDRNGTLRHMSVNDLPVGRSVDETLRLVKAFQFADKHGEVCPAGW 180
VL++D G A RGLF+ID G LR +++NDLPVGRSVDE LRL+ AFQF ++HGEVCPA W
Sbjct: 114 VLIEDAGVAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANW 173
Query: 181 NPDTNADTIKPNPKDSKEYFQK 246
+ +DTI + K+ ++YF K
Sbjct: 174 H--KGSDTI--DTKNPEKYFSK 191
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 26.6 bits (56), Expect = 1.2
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -1
Query: 179 QPAGHTSPCLSANWKALTRRSVSSTERPTGRSFTDM*RRVPLRSIMNKPLNANPSSSN 6
Q +G P LS N TR + + D+ R+VP +S+ K +A+P N
Sbjct: 634 QSSGRPGP-LSPNLNVTTRIDIKGKKGSMHLQPRDVNRKVPFKSMHTKSKSADPVVGN 690
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 2.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 178 WNPDTNADTIKPNPKDS 228
WNP+ D+IK NP+ S
Sbjct: 1219 WNPEYTNDSIKSNPEGS 1235
>SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 204
Score = 25.4 bits (53), Expect = 2.9
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -1
Query: 173 AGHTSPCLSANWKALTRRSVSSTERPTGRSFTDM*RRVPLRS 48
A T+ +SA+ +ALT R +++ E + R F VPLR+
Sbjct: 91 ANGTTTGISAHDRALTTRQLANPEVTSPREFNRPGHIVPLRA 132
>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 25.0 bits (52), Expect = 3.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 179 QPAGHTSPCLSANWKALTRRSVSSTERPTGRSFTD 75
+P G TSPC +L+ + + T RP +F D
Sbjct: 290 KPNGETSPCNYEVDASLSIKELGLTYRPAEETFKD 324
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 25.0 bits (52), Expect = 3.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 214 NPKDSKEYFQKAN*LEH*GRT 276
NP D+ Y+ KA+ LEH G T
Sbjct: 1073 NPTDTFAYYIKASLLEHLGET 1093
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.6 bits (51), Expect = 5.0
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +1
Query: 181 NPD-TNADTIKPNPKDSKEYFQKAN 252
+PD T+ +K NPKD+ Y K N
Sbjct: 12 SPDNTDFIPLKDNPKDTSSYINKKN 36
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 24.6 bits (51), Expect = 5.0
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Frame = +3
Query: 261 TLRSHLPAAV*CKDTFCC--------YIHKSTVCENI*SCYRK 365
T+ S +P C+D C + K CENI SC RK
Sbjct: 1290 TINSRVPFVYICEDETCIPTDLQSDGVLLKPITCENIESCLRK 1332
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 24.2 bits (50), Expect = 6.7
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -1
Query: 200 SALVSGFQPAGHTSPCLSANWKALTRRSVSSTERPTGRSFTDM 72
S L ++ HT PC S W L++ ++ S + S D+
Sbjct: 172 SPLKPKYRLTKHTQPCTSVCWNFLSKGTLVSGSQDATLSCWDL 214
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 23.8 bits (49), Expect = 8.8
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -1
Query: 218 GFGLMVSALVSGFQPAGHTSPCLS 147
GFG M+ ++G GH +P ++
Sbjct: 352 GFGCMLGVYIAGGISGGHVNPAVT 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,488,865
Number of Sequences: 5004
Number of extensions: 26723
Number of successful extensions: 78
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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