Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt18m18
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1 |Sc...   173   1e-44
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    65   9e-12
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    54   2e-08
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    27   2.9  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   5.0  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    26   5.0  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    26   5.0  
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    25   6.6  

>SPAC15E1.08 |||NatA N-acetyltransferase complex subunit Ard1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 177

 Score =  173 bits (422), Expect = 1e-44
 Identities = 83/123 (67%), Positives = 100/123 (81%), Gaps = 1/123 (0%)
 Frame = +2

Query: 245 MNIRCARPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKM 424
           M+IR AR SDL  MQ+CNL  LPENYQ+KYY YH +SWP LSYVA D KG +VGYVLAKM
Sbjct: 1   MDIRPARISDLTGMQNCNLHNLPENYQLKYYLYHAISWPMLSYVATDPKGRVVGYVLAKM 60

Query: 425 EEDGEDN-RHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAAL 601
           EE+ +D   HGHITS++V RS+R LGLA++LM Q+  AMVE + AKY+SLHVRKSNRAA+
Sbjct: 61  EEEPKDGIPHGHITSVSVMRSYRHLGLAKRLMVQSQRAMVEVYGAKYMSLHVRKSNRAAI 120

Query: 602 NLY 610
           +LY
Sbjct: 121 HLY 123


>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 64.9 bits (151), Expect = 9e-12
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
 Frame = +2

Query: 263 RPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGH--IVGYVLAKMEEDG 436
           + +DL +  + NL  L E + + +Y  +   WP L  V E +     ++GY++ K E  G
Sbjct: 8   KATDLFSFNNINLDPLTETFNISFYLSYLNKWPSLCVVQESDLSDPTLMGYIMGKSEGTG 67

Query: 437 EDNRHGHITSLAVKRSHRRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 610
           ++  H H+T++ V  + RRLGLA+ +M+     +     A +V L VR SN  A++ Y
Sbjct: 68  KE-WHTHVTAITVAPNSRRLGLARTMMDYLE-TVGNSENAFFVDLFVRASNALAIDFY 123


>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 33/101 (32%), Positives = 50/101 (49%)
 Frame = +2

Query: 308 LPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLAVKRSH 487
           L E Y    Y Y    WP+ S+VA D     +G V+ K +        G+I  LA+ + +
Sbjct: 23  LSEPYSKYVYRYFVHQWPEFSFVALDND-RFIGAVICKQDVHRGTTLRGYIAMLAIVKEY 81

Query: 488 RRLGLAQKLMNQASLAMVECFQAKYVSLHVRKSNRAALNLY 610
           R  G+A KL  QASL +++   A+ + L     N AA++ Y
Sbjct: 82  RGQGIATKL-TQASLDVMKNRGAQEIVLETEVDNEAAMSFY 121


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 362 GAKKVHGRSNISSDSSLADTISC 294
           G K VHG  N++S  +++D + C
Sbjct: 577 GGKAVHGLVNLASSRNVSDRVKC 599


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 457 VTMTIILTVLFHFCQNISNNMS 392
           +  +I+LT+LF+F  N+S+ M+
Sbjct: 278 IPFSIVLTILFYFDHNVSSVMA 299


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 173 TYHLVVLEQIEIWINSTSKQCTNFKI*LIGEVHKIKSLEYLL*PNFLKY 27
           T H +V  +  +W+ S S Q T   + ++  V K  S+E LL P   K+
Sbjct: 293 TLHDLVSTRCSVWLTSPSSQRTTKDLEVLNNVLK-DSIEPLLLPTVNKF 340


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 28  YFKKFGYSRYSKDLIL*TSPI 90
           YF++FGY+ Y   L+L  +PI
Sbjct: 343 YFRRFGYNDYQLYLLLSCAPI 363


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 445 IILTVLFHFCQNISNNMSFFIFSYITELGP 356
           ++LT L H    + +N + F+  Y+ +L P
Sbjct: 252 VVLTTLMHMAWALLDNPNLFVEPYVQQLMP 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,992
Number of Sequences: 5004
Number of extensions: 46040
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)